GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:08:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 24 from patent US 5965727.
AR079827.1:68-87
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT68GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 24 from patent US 6563025.
AR321669.1:68-87
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT68GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 24 from Patent WO0222675.
AX412260.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 25 from Patent WO0222675.
AX412261.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 585 from Patent WO0222675.
AX412821.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 588 from Patent WO0222675.
AX412824.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 150 from Patent WO0216655.
AX505455.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 103 from Patent WO03000898.
AX651316.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 150 from patent US 7692065.
GV687091.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 150 from patent US 8039690.
GY498221.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 3663 from Patent EP2194140.
HC893511.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 9556 from Patent EP2194140.
HC899404.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 3663 from patent US 8952217.
HK422495.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 9556 from patent US 8952217.
HK425416.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 28959 from patent US 8952217.
HK435011.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 7 from Patent EP2547195.
JB336408.1:379-398
GTTGAGCCAGGTTCTCAGATGTCAAGCGTT379GGTCGTTATAGCGTTGTTGGGGCTCAACCTGCCATGGAGATCGTGGCAAA
Sequence 15 from Patent EP2547195.
JB336416.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Sequence 17 from Patent EP2547195.
JB336418.1:373-392
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT373GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Eukaryotic synthetic construct RNA for anthranilate synthetase alpha subunit, complete cds.
AB205196.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Eukaryotic synthetic construct mAS1-2 gene for anthranilate synthase, complete cds.
AB214533.1:376-395
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT376GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013G11_T7.
AM390657.1:424-443
GTTGAGCCTGGCTCTCANNTGTCCAGCGTT424GGTCGTTATAGCGTTGTTGGGGCTCNNCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013H10_T7.
AM390671.1:425-444
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT425GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
E3906 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E3906, mRNA sequence.
BQ791086.1:175-194
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT175GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-040H10, 5' end sequence.
DK471017.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-065M22, 5' end sequence.
DK480701.1:375-394
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT375GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-083D15, 5' end sequence.
DK487371.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-086B06, 5' end sequence.
DK488464.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-101E06, 5' end sequence.
DK494283.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-117H10, 5' end sequence.
DK500467.1:464-483
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT464GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-119C02, 5' end sequence.
DK501106.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-123F07, 5' end sequence.
DK502713.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-128D19, 5' end sequence.
DK504589.1:401-420
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT401GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica oleracea var. viridis mRNA, clone: KALE-130K04, 5' end sequence.
DK505509.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCAGCCTGCGATGGAGATAGTTGCAAAGG
Brassica oleracea var. viridis mRNA, clone: KALE-141B18, 5' end sequence.
DK509507.1:467-486
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT467GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
altr009xm11 A. brassicicola mycelial culture infecting B. oleracea Alternaria brassicicola cDNA clone altr009xm11, mRNA sequence.
DN478457.1:159-178
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT159GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
32ETGS24_UP_020_F04_09FEB2005_022 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE427199.1:462-481
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT462GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
AYASL92TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence.
EG486487.1:466-485
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT466GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
BNARO6GH_T3_005_D02_6DEC2006_010 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES908781.1:446-465
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT446GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
BNARO6GH_T3_014_A03_07DEC2006_031 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES909978.1:445-464
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT445GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
36RDBRG_UP_092_F11_20JAN2006_085 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES930513.1:464-483
GTTGAGCCTGGCTCTCAGATGTCCCGCGTT464GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
36RDBRG_UP_102_B06_20JAN2006_046 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES931319.1:465-484
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT465GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
0189507 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092340.1:534-553
GTTGAGCCTGGCTCTCAGATGTCTAGCGTT534GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
0125487 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV120175.1:460-479
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT460GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
0128637 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV123325.1:493-512
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT493GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
0128807 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV123495.1:464-483
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT464GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
0210803 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV144869.1:332-351
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT332GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
0083786 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV159924.1:272-291
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT272GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
BR023446 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-054E09 5', mRNA sequence.
EX038802.1:404-423
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT404GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
BR121644 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-89E02 5', mRNA sequence.
EX137814.1:445-464
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT445GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF01P24, 5'-end sequence.
FY064069.1:509-528
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT509GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTTGCAAA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF03A13, 5'-end sequence.
FY064434.1:509-528
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT509GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTTGCAAA
13JKBNM2_UP_052_D10_26SEPT2007_074 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR438250.1:538-557
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT538GGTCGTTATAGCGTTGTTGG
CCPd_EST_960 Piriformospora indica colonized with Chinese cabbage roots library Brassica rapa subsp. chinensis cDNA, mRNA sequence.
JZ470055.1:107-126
GTTGAGCCTGGCTCTCAGATGTCCAGCGTT107GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
TSA: Pachycladon cheesemanii 27730_1814_16495_5_41.Pachleaf mRNA sequence.
JP972803.1:460-479
GTTGAGCCAGGTTCTCAGATGTCAAGCGTT460GGTCGTTATAGCGTTGTTGGGGCTCAACCTGCGATGGAGATTGTGGCAAA
TSA: Raphanus sativus RS26581 mRNA sequence.
JT811128.1:386-405
GTTGAGCCTGGCTCTCAGATGTCCAGCGTC386GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCAATGGAGATCGTGGCAAA
BOHZK33TF BO_2_3_KB Brassica oleracea genomic clone BOHZK33, genomic survey sequence.
BH657831.1:523-542
AGTTCCTAATTGTTTCTTTGATCACAATAG523GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
BOMGW61TF BO_2_3_KB Brassica oleracea genomic clone BOMGW61, genomic survey sequence.
BH719251.1:139-158
AGTTCCTAATTGTTTCTTTGATCACAATAG139GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
oeh24b09.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH988980.1:529-548
AGTTCCTAATTGTTTCTTTGATCACAATAG529GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
BOMSE84TF BO_2_3_KB Brassica oleracea genomic clone BOMSE84, genomic survey sequence.
BZ518904.1:462-481
AGTTCCTAATTGTTTCTTTGATCACAATAG462GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
KBrH092K03R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH092K03, genomic survey sequence.
DU117952.1:471-490
TTTTTAGTTCCTAATACAAGATCACAATAG471GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
BH_PBa022N16.F BH_PBa Boechera holboellii genomic 5', genomic survey sequence.
KS378841.1:557-576
TTGTTTCCTTGATGTGATTGTTCTCGATAG557GGTCGTTATAGCGTTGTTGGGGCTCAACCCGCGATGGAGATCGTGGCAAA
BH_PBa035A10.F BH_PBa Boechera holboellii genomic 5', genomic survey sequence.
KS407228.1:341-360
TTGTTTCCTTGATGTGATTGTTCTCGATAG341GGTCGTTATAGCGTTGTTGGGGCTCAACCCGCGATGGAGATCGTGGCAAA
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZH05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress).
BX829784.1:407-426
GTTGAGCCTGGTTCTCAGATGTCTAGCGTT407GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189396.2:139352-139371
TTTTTAGTTCCTAATACAAGATCACAATAG139352GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH076J22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC241147.1:57891-57910
TTTTTAGTTCCTAATACAAGATCACAATAG57891GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTTGCAAA
Arabidopsis thaliana AT5g05730/MJJ3_14 mRNA sequence.
AY072013.1:468-487
GTTGAGCCTGGTTCTCTCCTGGCTAGCGTT468GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:77933312-77933331
AGTTCCTAATTGTTTCTTTGATCACAATAG77933312GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Camelina sativa cultivar CO46 chromosome 8.
CP131557.1:27617989-27618008
CTTTGTCATGTGGATTGTTTATAACGATAG27617989GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:63241758-63241777
TGTTAATTGTTTTTGATTGATCTTTAACAG63241758GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica rapa genome, scaffold: A10.
LR031577.1:16348035-16348054
TGTTAATTGTTTTTGATTGATGTTTAATAG16348035GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:61300148-61300167
TGTTAATTGTTTTTGATTGATCTTTAATAG61300148GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:19082330-19082349
TGTTAATTGTTTTTGATTGATGTTTAATAG19082330GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Arabidopsis thaliana anthranilate synthase alpha subunit gene, complete cds.
M92353.1:3060-3079
TTGTTTCTTTGATGTGATTGGTCTCGATAG3060GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATCGTGGCAAA
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:68191890-68191909
TTCCTGATTGTTGTGATTGATCTTAAATAG68191890GGTCGTTATAGCGTTGTTGGGGCTCAACCTGCAATGGAGATCGTGGCTAA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:5950304-5950323
CCTAATTGTTTCTATGATCGATGATAACAG5950304GGTCGTTATAGCGTTGTTGGGGCTCAGCCTGCGATGGAGATAGTGGCAAA
Cochlearia excelsa genome assembly, chromosome: 5.
OY748331.1:33321448-33321467
GTTCCTTTTGGTTTGATTTGATGACAATAG33321448GGTCGTTATAGCGTTGTTGGAGCTCAACCGGCGATGGAGATTGTGGCAAA
Nasturtium officinale genome assembly, chromosome: 8.
OY978506.1:12683537-12683556
TTGTTCCCTTGATGGGACTGATCTCAATAG12683537GGTCGTTATAGCGTTGTTGGGGCTCAACCCGCTATGGAGATTGTGGCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTCGTTATAGCGTTGTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTCGTTATAGCGTTGTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.564 | 2.556 | search_plus_done; http://172.18.8.135:50400/match?q=GGTCGTTATAGCGTTGTTGG&k=0&no_gap=0&offset=0&limit=50
2.633 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACAACGCTATAACGACC&k=0&no_gap=0&offset=0&limit=0
2.633 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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