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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 03:34:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOGSI77TF BOGS Brassica oleracea genomic clone BOGSI77, genomic survey sequence.
BH536469.1:179-198
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA179GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
BOT01-42G23TR BOT01 Brassica oleracea genomic clone BOT01-42G23, genomic survey sequence.
FI705187.1:616-635
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA616GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
BOT01-42G24TR BOT01 Brassica oleracea genomic clone BOT01-42G24, genomic survey sequence.
FI705698.1:617-636
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA617GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
BOT01-44D15TR BOT01 Brassica oleracea genomic clone BOT01-44D15, genomic survey sequence.
FI705931.1:573-592
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA573GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
BOT01-111G18TF BOT01 Brassica oleracea genomic clone BOT01-111G18, genomic survey sequence.
FI752585.1:318-337
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA318GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
BOT01-119E11TF BOT01 Brassica oleracea genomic clone BOT01-119E11, genomic survey sequence.
FI757333.1:616-635
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA616GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55131377-55131396
AGGAGGCGGCGGTGGAGGGGCTGGAGTCAA55131377GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55791225-55791244
TGAAATCGGCGGTGGAGGGGCTGGAGTCAA55791225GGTCTGACCGGAAGTGCATAGAGTGCGGAGAGGGGGAAATGGGGGTCGAA
Crassostrea gigas strain QD chromosome 8.
CP048846.1:21731274-21731293
CAGCATGGTTGTGATGGAAGGGGGGAGTTA21731274GGTCTGACCGGAAGTGCATAAAAGAATTCTTTTATAACGAACAAAAGAGT
Chrysolina americana genome assembly, chromosome: X.
OY293420.1:9219718-9219737
CGCTAATATCAGACCAAATATTACACTTTT9219718GGTCTGACCGGAAGTGCATAATTTTTTTCACTTCAAATGAAAGTATAATT
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:20341602-20341621
GCATGGTTGTGAGGAAGGGGGGGGGGGGTA20341602GGTCTGACCGGAAGTGCATAAAAGAATTCTTTTATAACGAACACAAGTGT
Sequence 1 from Patent WO9850558.
A83277.1:117-136
TTCGACCCCCATTTCCCCCTCTCCGCACTC117TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Sequence 12 from patent US 6469149.
AR241300.1:117-136
TTCGACCCCCATTTCCCCCTCTCCGCACTC117TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Sequence 4 from patent US 6630330.
AR405966.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Sequence 4 from Patent WO0210425.
AX374951.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Sequence 4 from Patent EP1498489.
CS017718.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Sequence 4 from Patent EP1820863.
CS694163.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
JP 2004504850-A/2: Ascorbic Acid Production from Yeasts.
DL070805.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Sequence 4 from patent US 7579171.
GP549735.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
21ACACMS_UP_010_D06_08MAR2004_042 Brassica napus 21ACACMS Brassica napus cDNA 5', mRNA sequence.
CX279629.1:95-114
TTCGACCCCCATTTCCCCCTCTCCGCACTC95TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-028E21, 5' end sequence.
DK466363.1:104-123
TTCGACCCCCATTTCCCCCTCTCCGCACTC104TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGATTTCA
Brassica oleracea var. viridis mRNA, clone: KALE-044F11, 5' end sequence.
DK472490.1:97-116
TTCGACCCCCATTTCCCCCTCTCCGCACTC97TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-109D06, 5' end sequence.
DK497317.1:131-150
TTCGACCCCCATTTCCCCCTCTCCGCACTC131TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGATTTCA
Brassica oleracea var. viridis mRNA, clone: KALE-119K11, 5' end sequence.
DK501305.1:131-150
TTCGACCCCCATTTCCCCCTCTCCGCACTC131TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGATTTCA
Brassica oleracea var. viridis mRNA, clone: KALE-137E21, 5' end sequence.
DK508056.1:104-123
TTCGACCCCCATTTCCCCCTCTCCGCACTC104TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGATTTCA
Brassica oleracea var. viridis mRNA, clone: KALE-153G06, 5' end sequence.
DK514197.1:104-123
TTCGACCCCCATTTCCCCCTCTCCGCACTC104TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
BNSCS3CT_UP_128_G09_09MAY2007_067 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV046828.1:104-123
TTCGACCCCCATTTCCCCCTCTCCGCACTC104TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
0096164 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV152893.1:183-202
TTCGACCCCCATTTCCCCCTCTCCGCACTC183TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19508808-19508827
TTCGACCCCCATTTCCCCCTCTCCGCACTC19508808TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Brassica oleracea mRNA for L-galactono-1,4-lactone dehydrogenase.
Z97060.1:129-148
TTCGACCCCCATTTCCCCCTCTCCGCACTC129TATGCACTTCCGGTCAGACCTTGACTCCAGCCCCTCCACCGCCGCCTCCT
Crassostrea gigas genome assembly, linkage group: LG4.
LR761637.1:31376814-31376833
ACACTTGTGTTCGTTATAAAAGAATTCTTT31376814TATGCACTTCCGGTCAGACCTAACTCCCCCCTTCCCTCACAACCATGCTG

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