GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:37:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB046B17F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB046B17, genomic survey sequence.
DX044954.1:450-472
AATGTAGATTTCACAAGAGTCAAAAGATTT450GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
KBrH050O17F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH050O17, genomic survey sequence.
DX913031.1:264-286
AATGTAGATTTCACAAGAGTCAAAAGATTT264GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB009G06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240986.1:1184-1206
AATGTAGATTTCACAAGAGTCAAAAGATTT1184GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070G10, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241060.1:26882-26904
AATGTAGATTTCACAAGAGTCAAAAGATTT26882GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
AC189554.2:133817-133839
AATGTAGATTTCACAAGAGTCAAAAGATTT133817GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:1647788-1647810
AATGTAGATTTCACAAGAGTCAAAAGATTT1647788GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTCCAACA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:1700616-1700638
AATGTAGATTTCACAAGAGTCAAAAGATTT1700616GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTCCAACA
Brassica rapa genome, scaffold: A03.
LR031572.1:1649085-1649107
AATGTAGATTTCACAAGAGTCAAAAGATTT1649085GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:1649933-1649955
AATGTAGATTTCACAAGAGTCAAAAGATTT1649933GGTGAGAAGAACTCTTTGTACGGTTGTGAATAATGTGATGTTAGTCTTCAACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022F09, complete sequence.
AC240998.1:48425-48447
TGTTGAAGACTAACATCACATTATTCACAA48425CCGTACAAAGAGTTCTTCTCACCAAATCTTTTGACTCTTGTGAAATCTACATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGAGAAGAACTCTTTGTACGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGAGAAGAACTCTTTGTACGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.136 | 0.127 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGAGAAGAACTCTTTGTACGG&k=0&no_gap=0&offset=0&limit=50
0.154 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=CCGTACAAAGAGTTCTTCTCACC&k=0&no_gap=0&offset=0&limit=41
0.155 | 0.001 | cgi_end;

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