GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:06:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Manihot esculenta mRNA, clone: CAS01_014_F24, 3'end.
DB943147.1:169-194
GTGAACTGGAACGATGATGATGATGATGAT169GGTGGTGGAGGAGACATCATTAACTGGTGGTTTTGGAGAATCCCAGATGAGGAAAT
Manihot esculenta mRNA, clone: CAS01_021_O04, 3'end.
DB945561.1:286-311
GTGAACTGGAACGATGATGATGATGATGAT286GGTGGTGGAGGAGACATCATTAACTGCTCGTTTTGGAGAATCCCAGATGAGGAAAT
Manihot esculenta mRNA, clone: CAS01_048_F12, 3'end.
DB954001.1:169-194
GTGAACTGGAACGATGATGATGATGATGAT169GGTGGTGGAGGAGACATCATTAACTGGTGGTTTTGGAGAATCCCAGATGAGGAAAT
CV01006A1D12.f1 CV01-normalized library Manihot esculenta cDNA clone CV01006A1D12.f1, mRNA sequence.
DV442054.1:25-50
TCATCTGGGATTCTCCAAAACCAC25CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CV01007A1G09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01007A1G09.f1, mRNA sequence.
DV442417.1:730-755
ATTTCCTCATCTGGGATTCTCCAAAACCAC730CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTT
CV01015B2C12.f1 CV01-normalized library Manihot esculenta cDNA clone CV01015B2C12.f1, mRNA sequence.
DV445378.1:257-282
ATTTCCTCATCTGGGATTCTCCAAAACCAC257CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCTGTTCAC
CV01024A2B08.f1 CV01-normalized library Manihot esculenta cDNA clone CV01024A2B08.f1, mRNA sequence.
DV448286.1:525-550
ATTTCCTCATCTGGGATTCTCCAAAACCAC525CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CV02009B1A07.f1 CV02-normalized library Manihot esculenta cDNA clone CV02009B1A07.f1, mRNA sequence.
DV452222.1:375-400
ATTTCCTCATCTGGGATTCTCCAAAACTAC375CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CV02015A1F02.f1 CV02-normalized library Manihot esculenta cDNA clone CV02015A1F02.f1, mRNA sequence.
DV454165.1:249-274
ATTTCCTCATCTGGGATTCTCCAAAACCAC249CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CV02021A2G03.f1 CV02-normalized library Manihot esculenta cDNA clone CV02021A2G03.f1, mRNA sequence.
DV456363.1:226-251
ATTTCCTCATCTGGGATTCTCCAAAACCAC226CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CV02021A2G10.f1 CV02-normalized library Manihot esculenta cDNA clone CV02021A2G10.f1, mRNA sequence.
DV456369.1:116-141
ATTTCCTCATCTGGGATTCTCCAAAACCAC116CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CV02027A1A01.f1 CV02-normalized library Manihot esculenta cDNA clone CV02027A1A01.f1, mRNA sequence.
DV458340.1:644-669
ATTTCCTCATCTGGGATTCTCCAAAACCAC644CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
CASRF46TF CASR Manihot esculenta cDNA 5', mRNA sequence.
FF535611.1:376-401
CCATTTCCTCATCTGATTCTCCAAAACCAC376CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC
K022B08 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence.
FG805357.1:405-430
ATTTCCTCATCTGGGATTCTCCAAAACCAC405CAGTTAATGATGTCTCCTCCACCACCATCATCATCATCATCATCGTTCCAGTTCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTGGTGGAGGAGACATCATTAACTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGGTGGAGGAGACATCATTAACTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.290 | 0.281 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGGTGGAGGAGACATCATTAACTG&k=0&no_gap=0&offset=0&limit=50
1.172 | 0.883 | search_minus_done; http://172.18.8.135:50400/match?q=CAGTTAATGATGTCTCCTCCACCACC&k=0&no_gap=0&offset=0&limit=47
1.180 | 0.007 | cgi_end;

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