GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 11:27:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 816 from Patent WO0065062.
AX041921.1:109523-109545
GAAACCACCGGAATGTTTGAACCCGTCCAC109523GGTTCTGCTCCTGATATAGCTGGAAAGAGGATAGCAAATCCCCTAGCTGCGAT
JP 2004500802-A/1: GENOME SEQUENCE AND POLYPEPTIDES OF PYROCOCCUS ABISSY, FRAGMENT AND USES THEREOF.
BD430793.1:1309523-1309545
GAAACCACCGGAATGTTTGAACCCGTCCAC1309523GGTTCTGCTCCTGATATAGCTGGAAAGAGGATAGCAAATCCCCTAGCTGCGAT
Sequence 45346 from patent US 7314974.
EA396522.1:823-845
GAAACCACCGGAATGTTTGAACCCGTCCAC823GGTTCTGCTCCTGATATAGCTGGAAAGAGGATAGCAAATCCCCTAGCTGCGAT
Sequence 45346 from patent US 9024113.
HK690079.1:823-845
GAAACCACCGGAATGTTTGAACCCGTCCAC823GGTTCTGCTCCTGATATAGCTGGAAAGAGGATAGCAAATCCCCTAGCTGCGAT
EST674074 normalized cDNA library of onion Allium cepa cDNA clone ACAEB36, mRNA sequence.
CF437729.1:640-662
TCTGGACCTGGACTCTTTGAACCAATACAT640GGTTCTGCTCCTGATATAGCTGGACAGGATGTGGCGAACCATTAGCAACAGTG
EST682607 normalized cDNA library of onion Allium cepa cDNA clone ACAHY07, mRNA sequence.
CF446262.1:565-587
TCTGGACCTGGACTCTTTGAACCAATACAT565GGTTCTGCTCCTGATATAGCTGGACAGGATGTGGCGAATCCATTAGCAACAGT
CGN-39109 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w3c22 5', mRNA sequence.
DV694562.1:301-323
TCGGGACCTGGATTATTTGAGCCTATACAT301GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
CGN-49025 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w25d16 5', mRNA sequence.
DV702613.1:301-323
TCGGGACCTGGATTATTTGAGCCTATACAT301GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
CGN-49480 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w26d16 5', mRNA sequence.
DV702993.1:312-334
TCGGGACCTGGATTATTTGAGCCTATACAT312GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
TransId-200792 CarCatBudEnri Coffea arabica cDNA clone CarCatBudEnri_16-E11 similar to 3-isopropylmalate dehydrogenase 2, chloroplast precursor - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GR992827.1:594-616
TCGGGACCTGGATTATTTGAGCCTATACAT594GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
CR00-XX-FV2-009-E08-EM.F Coffea racemosa FV2 Coffea racemosa cDNA clone CR00-XX-FV2-009-E08-EM, mRNA sequence.
GT663806.1:310-332
TCGGGACCTGGATTATTTGAGCCTATACAT310GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
CA00-XX-CS1-041-E03-JE.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-041-E03-JE, mRNA sequence.
GW431685.1:358-380
TCGGGACCTGGATTATTTGAGCCTATACAT358GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
CA00-XX-LV4-025-D12-AG.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-025-D12-AG, mRNA sequence.
GW488222.1:95-117
TCGGGACCTGGATTATTTGAGCCTATACAT95GGTTCTGCTCCTGATATAGCTGGACAGGACAAAGCAAACCCATTGGCAACAGT
TSA: Allium cepa CUDHLF2_11153 mRNA sequence.
JR853971.1:174-196
TCTGGACCTGGACTCTTTGAACCAATACAT174GGTTCTGCTCCTGATATAGCTGGACAGGATGTGGCGAATCCATTAGCAACAGT
CPCM-8 Coffee microsatellite sequence Coffea canephora STS genomic, sequence tagged site.
BV722911.1:471-493
TAGGGACCTGGATTATTTGAGCCTATACAT471GGTTCTGCTCCTGATATAGCTGGACAGGTTGGTTCAGTAACATTTCATATGGA
CPCM-13 Coffee microsatellite sequence Coffea canephora STS genomic, sequence tagged site.
BV722913.1:458-480
TAGGGACCTGGATTATTTGAGCCTATACAT458GGTTCTGCTCCTGATATAGCTGGGACAGGTTGGTTCAGTAACATTTCATATGG
Pyrococcus abyssi GE5 complete genome; segment 5/6.
AJ248287.2:115073-115095
GAAACCACCGGAATGTTTGAACCCGTCCAC115073GGTTCTGCTCCTGATATAGCTGGAAAGAGGATAGCAAATCCCCTAGCTGCGAT
Methanobacterium ferruginis NBRC 105197 DNA, complete genome.
AP027738.1:2673880-2673902
ATCATGGCAGTGGGATTAGCCATACCTTTA2673880CCAGCTATATCAGGAGCAGAACCATGCACTGGCTCAAATAATCCATTAACATC
Miniphocaeibacter halophilus strain AMB_01 chromosome, complete genome.
CP066744.1:1751820-1751842
ATTAATGCTGTTGGATTGGCAATGTTTTTT1751820CCAGCTATATCAGGAGCAGAACCATGAACAGGTTCAAAAATTGCAATATCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTTCTGCTCCTGATATAGCTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTCTGCTCCTGATATAGCTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.647 | 0.639 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTCTGCTCCTGATATAGCTGG&k=0&no_gap=0&offset=0&limit=50
0.676 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGCTATATCAGGAGCAGAACC&k=0&no_gap=0&offset=0&limit=33
0.677 | 0.001 | cgi_end;

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