GGGenome | Results

2025-04-17 08:22:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EST617032 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHE06 5' end, mRNA sequence.
BQ509617.2:537-559

ATGCGTTTATCTGTCACTTGCAGAACCATT537GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

EST747463 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMAQ10 5' end, mRNA sequence.
CK284741.1:489-511

GTGCATTTATCTGTCACTTGCAGGACCATT489GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

EST751993 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMBM66 5' end, mRNA sequence.
CK289271.1:589-611

GTGCATTTATCTGTCACTTGCAGGACCATT589GGTTCTGTATCAGGAAAGTAAATGGGGAATGGTACAACTTTGACAGTCTTAAG

EST752840 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMBS61 5' end, mRNA sequence.
CK290118.1:488-510

GTGCATTTATCTGTCACTTGCAGGACCATT488GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

EST754511 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMC476 5' end, mRNA sequence.
CK291797.1:499-521

GTGCATTTATCTGTCACTTGCAGGACCATT499GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

EST757372 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCP07 5' end, mRNA sequence.
CK294658.1:513-535

GTGCATTTATCTGTCACTTGCAGGACCATT513GGTTCTGTATCAGGAAAGTAAATGGGGAATGGTACAACTTTGACAGTCTTAAG

EST757844 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCS65 5' end, mRNA sequence.
CK295130.1:500-522

GTGCATTTATCTGTCACTTGCAGGACCATT500GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

26446 Suspension culture Solanum tuberosum cDNA, mRNA sequence.
CN212913.1:415-437

ATGCGTTTATCTGTCACTTGCAGAACCATT415GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

63523.1 Mixed Leaf Solanum tuberosum cDNA clone 63523 5', mRNA sequence.
CV499194.1:443-465

ATGCGTTTATCTGTCACTTGCAGAACCATT443GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

LH__Ea08K16.r LH__Ea Solanum habrochaites cDNA clone LH__Ea08K16 3', mRNA sequence.
DN171296.1:400-422

ATGCATTTATCTGTCACTTGCAGAACCATT400GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

15769.3 Stolon Solanum tuberosum cDNA clone 15769 3', mRNA sequence.
DN850243.1:400-422

ATGCGTTTATCTGTCACTTGCAGAACCATT400GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

SV5_57D08_SV5_57_063 SV5 Solanum chacoense cDNA, mRNA sequence.
DN979062.1:124-146

ATGCGTTTATCTGTCACTTGCAGAACCATT124GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

CGN-44816 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w23o16 5', mRNA sequence.
DV699060.1:612-634

ATGCATTTATCTGTCATTTACAAAATCATT612GGTTCTGTATCAGGAAAGTAAATGGAGAATGGTATAACTTTGATAGTCTTTAT

KN6B.105B09F.060104T7 KN6B Nicotiana tabacum cDNA clone KN6B.105B09, mRNA sequence.
EB440007.1:532-554

GTGCATTTATCTGTCACTTGCAGGACCATT532GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

KT7C.110F09F.051221T7 KT7 Nicotiana tabacum cDNA clone KT7C.110F09, mRNA sequence.
EB451358.1:526-548

GTGCATTTATCTGTCACTTGCAGGACCATT526GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

D10_j001_plate_88 j001 Nicotiana benthamiana cDNA 5' similar to Ataxin-3 homolog (EC 3.4.22.-), mRNA sequence.
EH366457.1:620-642

GTGCATTTATCCGTCACTTGCAGGACCATT620GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCT

Solanum torvum mRNA, clone: TVR25K23, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS119413.1:411-433

ATGCATTCATCTGTCACTTGCAGGACCATT411GGTTCTGTATCAGGAAAGTAAATGGAGAGTGGTACAACTTTGACAGTCTCAAG

TransId-229368 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEV422TV similar to Ataxin-3 homolog - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT005289.1:376-398

ATGCGTTTATCTGTCATTTACAAAATCATT376GGTTCTGTATCAGGAAAGTAAATGGAGAATGGTATAACTTTGATAGTCTTTAT

LH__Ea08K16.f LH_Ea Solanum habrochaites cDNA, mRNA sequence.
GT173821.1:404-426

ATGCATTTATCTGTCACTTGCAGAACCATT404GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

CA00-XX-RX1-057-F09-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-057-F09-EB, mRNA sequence.
GW438610.1:608-630

AATGCGTTTATCTGTCATTTACAAATCATT608GGTTCTGTATCAGGAAAGTAAATGGAGAATG

CA00-XX-FB1-124-D10-CB.F Coffea arabica FB1 Coffea arabica cDNA clone CA00-XX-FB1-124-D10-CB, mRNA sequence.
GW473601.1:597-619

ATGCGTTTATCTGTCATTTACAAAATCATT597GGTTCTGTATCAGGAAAGTAAATGGAGAATGGTATAACTTTGATAGTCTTTAT

TSA: Capsicum annuum MGMT_Contig23522, mRNA sequence.
JW073766.1:592-614

ATGCATTTATCTGTCACTTGCTGAACCATT592GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

CHO_OF4753xk01f1.ab1 CHO_OF4 Nicotiana tabacum genomic 5', genomic survey sequence.
FH474791.1:113-135

GTGCATTTATCTGTCACTTGCAGGACCATT113GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

Solanum tuberosum cultivar Solyntus chromosome 10.
CP055243.1:39479286-39479308

ATGCGTTTATCTGTCACTTGCAGAACCATT39479286GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:111473170-111473192

ATGCATTTATCTGTCACTTGCAGAACCATT111473170GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTTAAG

Solanum verrucosum cultivar 11H23 chromosome 10.
CP133621.1:48600031-48600053

ATGCGTTTATCTGTCACTTGCAGAACCATT48600031GGTTCTGTATCAGGAAAGTAAATGGGGAGTGGTACAACTTTGACAGTCTCAAG

EST559044 potato roots Solanum tuberosum cDNA clone cPRO11F19 5' end, mRNA sequence.
BM111508.1:601-623

CTTGAGACTGTCAAAGTTGTACCACTCCCC601ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAACGCAT

15769 Stolon Solanum tuberosum cDNA, mRNA sequence.
CK854573.1:607-629

CTTGAGACTGTCAAAGTTGTACCACTCCCC607ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAAGTGACAGATAAAACGC

LH__Ea08K16.f LH__Ea Solanum habrochaites cDNA clone LH__Ea08K16 5', mRNA sequence.
DN171295.1:607-629

CTTGAGACTGTCAAAGTTGTACCACTCCCC607ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAAATAAATGCAT

15769.2 Stolon Solanum tuberosum cDNA clone 15769 5', mRNA sequence.
DN850242.1:607-629

CTTGAGACTGTCAAAGTTGTACCACTCCCC607ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAACGCAT

LH__Ea08K16.r LH_Ea Solanum habrochaites cDNA, mRNA sequence.
GT173862.1:642-664

CTTGAGACTGTCAAAGTTGTACCACTCCCC642ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAAATAAATGCAT

TSA: Nicotiana benthamiana isotig08942.Nb_leaf mRNA sequence.
KA745186.1:415-437

CTTAAGACTGTCAAAGTTGTACCACTCCCC415ATTTACTTTCCTGATACAGAACCAATGGCCTGCAAGTGACAGATAAATGCACT

LuSp168M05_1061063913853_TP POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp168M05, genomic survey sequence.
GS364558.1:72-94

CTTGAGACTGTCAAAGTTGTACCACTCCCC72ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAACGCAT

Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:142624091-142624113

CTTAAGACTGTCAAAGTTGTACCACTCCCC142624091ATTTACTTTCCTGATACAGAACCAATGGTTCAGCAAGTGACAGATAAATGCAT

Solanum lycopersicum Micro-Tom DNA, chromosome 10, draft genome sequence.
AP028944.1:64651318-64651340

CTTGAGACTTTCAAAGTTGTACCACTCCCC64651318ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAATGCAT

Solanum lycopersicum cultivar I-3 chromosome 10.
CP023766.1:65497101-65497123

CTTGAGACTTTCAAAGTTGTACCACTCCCC65497101ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAATGCAT

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:175662823-175662845

CTTAAGACTGTCAAAGTTGTACCACTCCCC175662823ATTTACTTTCCTGATACAGAACCAATGGTTCAGCAAGTGACAGATAAATGCAT

Solanum pennellii chromosome ch10, complete genome.
HG975449.1:82501833-82501855

CTTGAGACTGTCAAAGTTGTACCACTCCCC82501833ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAATGCAT

Solanum lycopersicum chromosome ch10, complete genome.
HG975522.1:64820672-64820694

CTTGAGACTTTCAAAGTTGTACCACTCCCC64820672ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAATGCAT

Solanum lycopersicum genome assembly, chromosome: 10.
OU640353.1:66574726-66574748

CTTGAGACTTTCAAAGTTGTACCACTCCCC66574726ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAATGCAT

Ailanthus altissima genome assembly, chromosome: 27.
OX327709.1:21676081-21676103

ATAAAGGCTGTCAAAATTATACCACTCTCC21676081ATTTACTTTCCTGATACAGAACCAATGGTCATGCAAATGACAAATAAATGCAT

Solanum dulcamara genome assembly, chromosome: 12.
OX359263.1:10239126-10239148

CTTGAGACTGTCAAAGTTGTACCACTCCCC10239126ATTTACTTTCCTGATACAGAACCAATGGTTCTGCAAGTGACAGATAAACGCAT

Hedera helix genome assembly, chromosome: 11.
OX359274.1:48188563-48188585

ATAGAGACTGTCAAAGTTGTACCACTCTCC48188563ATTTACTTTCCTGATACAGAACCAATGATCCTGTAAATGACAAATAAATGCAT

Comarum palustre genome assembly, chromosome: 1.
OX637572.1:35949915-35949937

ATACAGACTGTCGAAATTATACCACTCCCC35949915ATTTACTTTCCTGATACAGAACCAATGATCTTGTAAATGACAGATAAACCCAT

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
1.190 | 1.181 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTCTGTATCAGGAAAGTAAAT&k=0&no_gap=0&offset=0&limit=50
1.483 | 0.292 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTACTTTCCTGATACAGAACC&k=0&no_gap=0&offset=0&limit=24
1.494 | 0.012 | cgi_end;

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