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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 00:04:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

DQ172879 Beta vulgaris roots cotyledon to first true leaf stage Beta vulgaris cDNA clone BvNH2D5, mRNA sequence.
DQ172879.1:88-108
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG88GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT
Solanum melongena mRNA, clone: AE003D03, 3'end, expressed in ovary at anthesis.
FS001249.1:285-305
CTCAAGAAGCAGCAGTAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: AE004D19, 3'end, expressed in ovary at anthesis.
FS001923.1:145-165
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG145GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: AE505C22, 3'end, expressed in ovary at 5d post-anthesis.
FS006412.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: CAL02C14, 3'end, expressed in callus at 3d after subculture.
FS008655.1:271-291
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG271GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: CAL06F06, 3'end, expressed in callus at 3d after subculture.
FS010984.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: CHX01D09, 3'end, expressed in ovary at 24h after anthesis.
FS011460.1:140-160
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG140GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: LS001M12, 3'end, expressed in ovary at anthesis.
FS018200.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGACCCTGCTT
Solanum melongena mRNA, clone: MLF03C11, 3'end, expressed in leaf at fully expanded leaf.
FS023990.1:280-300
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG280GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: OVS01P02, 3'end, expressed in ovary at 5d pre-anthesis.
FS030105.1:287-307
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG287GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: OVS06F16, 3'end, expressed in ovary at 5d pre-anthesis.
FS032849.1:309-329
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG309GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED02G18, 3'end, expressed in peduncle at anthesis.
FS034063.1:282-302
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG282GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED04B13, 3'end, expressed in peduncle at anthesis.
FS035159.1:309-329
CTCAAGAAACAGCAGCAGGAGCAGCGGTTG309GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED04G14, 3'end, expressed in peduncle at anthesis.
FS035366.1:141-161
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG141GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED05I08, 3'end, expressed in peduncle at anthesis.
FS036064.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGTGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED07H01, 3'end, expressed in peduncle at anthesis.
FS037270.1:238-258
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG238GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER02F01, 3'end, expressed in pericarp at 10d after anthesis.
FS038426.1:248-268
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG248GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER03E21, 3'end, expressed in pericarp at 10d after anthesis.
FS039015.1:311-331
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG311GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER04C12, 3'end, expressed in pericarp at 10d after anthesis.
FS039560.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER05G18, 3'end, expressed in pericarp at 10d after anthesis.
FS040308.1:298-318
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG298GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER05M16, 3'end, expressed in pericarp at 10d after anthesis.
FS040510.1:166-186
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG166GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER06F07, 3'end, expressed in pericarp at 10d after anthesis.
FS040807.1:291-311
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG291GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER08B20, 3'end, expressed in pericarp at 10d after anthesis.
FS041956.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA01G10, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS042785.1:305-325
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG305GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA01H02, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS042814.1:307-327
CTCAAGAAGCAGCAGCAGGGGCAGCGGTTG307GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA04C15, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS044619.1:249-269
CTCAAGGAGCAGCAGCAGGAGCAGCGGTTG249GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA05I02, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045508.1:299-319
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG299GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA07O16, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS047074.1:286-306
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG286GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: RBW07C20, 3'end, expressed in root at 3w after germination.
FS052685.1:289-309
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG289GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP02A10, 3'end, expressed in sepal at 10d after anthesis.
FS058820.1:313-333
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG313GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP03F12, 3'end, expressed in sepal at 10d after anthesis.
FS059665.1:244-264
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG244GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP04E22, 3'end, expressed in sepal at 10d after anthesis.
FS060289.1:150-170
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG150GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05B02, 3'end, expressed in sepal at 10d after anthesis.
FS060784.1:137-157
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG137GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAACACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05B04, 3'end, expressed in sepal at 10d after anthesis.
FS060786.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05M14, 3'end, expressed in sepal at 10d after anthesis.
FS061249.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05N01, 3'end, expressed in sepal at 10d after anthesis.
FS061268.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP08C13, 3'end, expressed in sepal at 10d after anthesis.
FS062670.1:286-306
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG286GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAACACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP08E09, 3'end, expressed in sepal at 10d after anthesis.
FS062744.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SmFL15K16, 3'end.
FS076809.1:298-318
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG298GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SmFL37F08, 3'end.
FS091802.1:303-323
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG303GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SmFL37N08, 3'end.
FS092156.1:303-323
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG303GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: YFR02G07, 3'end, expressed in fruit at 2w after anthesis.
FS095278.1:248-268
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG248GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGCGAGGCCCTGCTT
Solanum melongena mRNA, clone: YFR03E01, 3'end, expressed in fruit at 2w after anthesis.
FS095846.1:309-329
CTCAAGAAGCAGCAGCAGGAGCAGCGGCTG309GGTTGAAAGCTTTTTGTTCCGCGCAGCCGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: YFR06H01, 3'end, expressed in fruit at 2w after anthesis.
FS097738.1:310-330
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG310GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum torvum mRNA, clone: TVL06D12, 3'end, expressed in leaf at vegetative stage, 2 months after germination.
FS101196.1:263-283
CTCAAGAAGCAGCAGCAGGGGCTGCGGTTG263GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum torvum mRNA, clone: TVR05C16, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS107347.1:150-170
CTCAAGAAGCAGCAGCAGGGGCTGCGGTTG150GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum torvum mRNA, clone: TVR11M05, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS111147.1:267-287
CTCAAGAAGCAGCAGCAGGGGCTGCGGTTG267GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum torvum mRNA, clone: TVR12J24, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS111668.1:295-315
CTCAAGAAGCAGCAGCAGGGGCTGCGGTTG295GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum torvum mRNA, clone: TVR21A22, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS116662.1:294-314
CTCAAGAAGCAGCAGCAGGGGCTGCGGTTG294GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum torvum mRNA, clone: TVR21I01, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS116930.1:264-284
CTCAAGAAGCAGCAGCAGGGGCTGCGGTTG264GGTTGAAAGCTTTTTGTTCCGCGTAGCTGAGCACTTCGTGAGGCCCTGCTT
TSA: Beta vulgaris Locus_827_Transcript_1/10_Confidence_0.059_Length_338 mRNA sequence.
JP485381.1:133-153
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG133GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT
TSA: Beta vulgaris Locus_827_Transcript_2/10_Confidence_0.441_Length_2100 mRNA sequence.
JP485382.1:1647-1667
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG1647GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT
TSA: Beta vulgaris Locus_827_Transcript_7/10_Confidence_0.574_Length_2723 mRNA sequence.
JP485384.1:1647-1667
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG1647GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTTGAAAGCTTTTTGTTCCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTGAAAGCTTTTTGTTCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
4.554 | 4.545 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTGAAAGCTTTTTGTTCCG&k=0&no_gap=0&offset=0&limit=50
4.612 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CGGAACAAAAAGCTTTCAACC&k=0&no_gap=0&offset=0&limit=0
4.612 | 0.000 | cgi_end;

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