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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 14:48:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

IS0013.B21.1_B12 IS-B-A-4 Picea engelmannii x Picea glauca cDNA clone IS0013_B12 3', mRNA sequence.
CO203751.1:504-522
GGCTGGAGGAGGAGGAGGTGGAGGAATCCG504GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0064.B21_F19 IS-B-A-7 Picea engelmannii x Picea glauca cDNA clone WS0064_F19 3', mRNA sequence.
CO205543.1:507-525
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG507GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGTTCT
WS01021.B21_B13 SS-R-N-A-11 Picea sitchensis cDNA clone WS01021_B13 3', mRNA sequence.
CO224192.1:501-519
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG501GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0011.B21_L24 WS-ES-A-1 Picea glauca cDNA clone WS0011_L24 3', mRNA sequence.
CO227363.1:503-521
GGCTGGAGGAGGAGGAGGTGGAGGAATCCG503GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0011.B21_E07 WS-ES-A-1 Picea glauca cDNA clone WS0011_E07 3', mRNA sequence.
CO227434.1:503-521
GGCTGGAGGAGGAGGAGGTGGAGGAATCCG503GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0012.B21_C16 WS-ES-A-1 Picea glauca cDNA clone WS0012_C16 3', mRNA sequence.
CO227602.1:291-309
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG291GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS00111.B21_O16 WS-ES-A-1 Picea glauca cDNA clone WS00111_O16 3', mRNA sequence.
CO230430.1:516-534
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG516GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS00112.B21_F10 WS-ES-A-1 Picea glauca cDNA clone WS00112_F10 3', mRNA sequence.
CO230565.1:515-533
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG515GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS00112.B21_O15 WS-ES-A-1 Picea glauca cDNA clone WS00112_O15 3', mRNA sequence.
CO230756.1:503-521
GGCTGGAGGAGGAGGAGGTGGAGGAATCCG503GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0019.B21_H24 WS-ES-A-1 Picea glauca cDNA clone WS0019_H24 3', mRNA sequence.
CO231256.1:503-521
GGCTGGAGGAGGAGGAGGTGGAGGAATCCG503GGTTGTAGACTGAGTGGAGGGCGTGACC
WS00725.B21_A05 WS-PS-N-A-8 Picea glauca cDNA clone WS00725_A05 3', mRNA sequence.
CO239188.1:516-534
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG516GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
GQ02512.B7_P05 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ02512_P05 3', mRNA sequence.
CO488223.2:493-511
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG493GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
GQ0258.B7_P10 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0258_P10 3', mRNA sequence.
CO489635.2:493-511
GGCTGGAGGAGGAGGAGGAGGAGGAATCCG493GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS02812.CR_I08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02812_I08 3, mRNA sequence.
DR478197.1:501-519
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG501GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0288.BR_B13 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0288_B13 3, mRNA sequence.
DR482069.1:499-517
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG499GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS02916.CR_K04 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02916_K04 3, mRNA sequence.
DR491120.1:658-676
AGGGGCCGGAGGAGGAGGAGGAGAAAGCGG658GGTTGTAGACTGAGTGGAGGGCGTGGAAGAGTCCTTTGGCTGTGGATCT
WS0298.BR_P08 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0298_P08 3, mRNA sequence.
DR495763.1:503-521
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG503GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS02731.CR_G18 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02731_G18 3, mRNA sequence.
DR511838.1:500-518
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG500GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS02732.CR_K06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02732_K06 3, mRNA sequence.
DR512265.1:521-539
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG521GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS02742.CR_G06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02742_G06 3, mRNA sequence.
DR516070.1:525-543
AGGGGCCGGAGGAGGAGGAGGAGAAAGCGG525GGTTGTAGACTGAGTGGAGGGCGTGGAAGAGTCCTTTGGCTGTGGATCT
WS02750.CR_C12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02750_C12 3, mRNA sequence.
DR518764.1:502-520
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG502GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGACCTCTC
WS0314.B21_D14 WS-MC-A-17 Picea glauca cDNA clone WS0314_D14 3, mRNA sequence.
DR546862.1:501-519
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG501GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS03216.C21_J04 WS-MC-N-A-20 Picea glauca cDNA clone WS03216_J04 3, mRNA sequence.
DR549826.1:501-519
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG501GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS03228.C21_K01 WS-MC-N-A-20 Picea glauca cDNA clone WS03228_K01 3, mRNA sequence.
DR554325.1:528-546
AGGGGCCGGAGGAGGAGGAGGAGAAAGCGG528GGTTGTAGACTGAGTGGAGGGCGTGGAAGAGTCCTTTGGCTGTGGATCT
WS0328.C21_I14 WS-MC-N-A-20 Picea glauca cDNA clone WS0328_I14 3, mRNA sequence.
DR556365.1:444-462
AGGGGCAGGAGGAGGAGGAGGAGGAATGCG444GGTTGTAGACTGAGTGGAGGGCGTGACAGGTTCCTTTGGCTGCGGATCT
WS00745.C21_P02 WS-PS-N-A-8 Picea glauca cDNA clone WS00745_P02 3, mRNA sequence.
DR577318.1:499-517
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG499GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTCGGCTGCGGATCT
WS0302.B21_I02 WS-SE-A-16 Picea glauca cDNA clone WS0302_I02 3, mRNA sequence.
DR581343.1:504-522
GGCTGGAGGAGGAGGAGGTGGAGGAATCCG504GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0332.C21_G11 WS-SE-N-A-18 Picea glauca cDNA clone WS0332_G11 3, mRNA sequence.
DR583022.1:488-506
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG488GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTCGGCTGCGGATCT
WS0403.C21_B18 SS-S-25 Picea sitchensis cDNA clone WS0403_B18 3', mRNA sequence.
ES262652.1:493-511
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG493GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0425.C21_N10 SS-NE-27 Picea sitchensis cDNA clone WS0425_N10 3', mRNA sequence.
ES670552.1:482-500
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG482GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
GQ03313.SP6_G20 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03313_G20 3', mRNA sequence.
EX389040.1:487-505
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG487GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0431.C21_N24 SS-NE-28 Picea sitchensis cDNA clone WS0431_N24 3', mRNA sequence.
FD747237.1:488-506
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG488GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCNGATCT
WS0434.C21_G11 SS-NE-28 Picea sitchensis cDNA clone WS0434_G11 3', mRNA sequence.
FD747966.1:500-518
AGGGGCTGGAGGAGGAGGAGGAGGAATCCG500GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGGCTGCGGATCT
WS0492.CR_K01 WS-CBM-34 Picea glauca cDNA clone WS0492_K01 3', mRNA sequence.
GW732926.1:583-601
GGGGGCTGGAGGAGGAGGAAGAGGAATCCG583GGTTGTAGACTGAGTGGAGGGCGTGACAGATTCCTTTGCCC
Onychomys torridus genome assembly, chromosome: X.
LR877211.1:15745059-15745077
AGGTACAGTCCAGTTGGGTTCTCTGGAGAA15745059CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAACCAAGATA
Onychomys arenicola genome assembly, chromosome: X.
OX460370.1:124026819-124026837
AGGTGCAGTCCAGTTGGGTTATCTGCAGAA124026819CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAACCAAGATA
Onychomys leucogaster genome assembly, chromosome: X.
OX460441.1:99752923-99752941
AGGTGCAGTCCAGTTGGGTTCTCTGGAGAA99752923CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAGCCAAGATA
Onychomys torridus genome assembly, chromosome: X.
OX460905.1:94726747-94726765
AGGTACAGTCCAGTTGGGTTCTCTGGAGAA94726747CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAACCAAGATA
Picea abies EST, clone K0000100014H04F1.
AM169693.1:121-139
AGATCCGCAGCCAAAGGAATCTGTCACGCC121CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea abies EST, clone K0000200009G10F1.
AM170785.1:91-109
AGATCCGCAGCCAAAGGAATCTGTCACGCC91CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea abies EST, clone K0000200009H09F1.
AM170795.1:69-87
AGATCCGCAGCCAAAGGAATCTGTCACGCC69CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
GQ0025.BR_B23 GQ002: Female cones developmental sequence Picea glauca cDNA clone GQ0025_B23 5', mRNA sequence.
CK440468.2:311-329
AGATCCGCAGCCAAAGGAATCTGTCACGCC311CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
GQ0025.BR_B02 GQ002: Female cones developmental sequence Picea glauca cDNA clone GQ0025_B02 5', mRNA sequence.
CK440872.2:171-189
AGATCCGCAGCCAAAGGAATCTGTCACGCC171CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0017.B21_P07 WS-ES-A-1 Picea glauca cDNA clone WS0017_P07 3', mRNA sequence.
CO229446.1:279-297
AGATCCGCAGCCGAAGGAATCTGTCACGCC279CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS00712.B21_D11 WS-PS-N-A-8 Picea glauca cDNA clone WS00712_D11 3', mRNA sequence.
CO239962.1:234-252
AGATCCGCAGCCAAAGGAATCTGTCACGCC234CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCTCCAGCC
GQ0258.B3_I07 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0258_I07 5', mRNA sequence.
CO489238.2:51-69
AGATCCGCAGCCAAAGGAATCTGTCACGCC51CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
GQ02512.B3_P05 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ02512_P05 5', mRNA sequence.
CO489245.2:272-290
AGATCCGCAGCCAAAGGAATCTGTCACGCC272CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCTCCAGCC
WS00949.BR_H06 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00949_H06 5, mRNA sequence.
DR449215.1:296-314
AGATCCGCAGCCAAAGGAATCTGTCACGCC296CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
WS00949.BR_I06 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00949_I06 5, mRNA sequence.
DR449237.1:296-314
AGATCCGCAGCCAAAGGAATCTGTCACGCC296CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
WS02812.C21_I08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02812_I08 5, mRNA sequence.
DR483827.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0288.B21_B13 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0288_B13 5, mRNA sequence.
DR487827.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS02916.C21_K04 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02916_K04 5, mRNA sequence.
DR498764.1:110-128
AAATCCACAGCCAAAGGACTCTTCCACGCC110CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
WS0298.B21_P08 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0298_P08 5, mRNA sequence.
DR503411.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS02719.B21_F12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02719_F12 5, mRNA sequence.
DR525199.1:298-316
AGATCCACAGCCAAAGGACTCTTTCACGCC298CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
TSA: Abies alba contig20624.Aaseedling mRNA sequence.
JV155767.1:333-351
AGATCCACAGCCAAAGGAAGCTGTCACGCC333CTCCACTCAGTCTACAACCCCCATTTCTCCTCCTCCTCCTCCGCCTGCC
Picea sitchensis clone WS02731_G18 unknown mRNA.
BT070485.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS02732_K06 unknown mRNA.
BT070499.1:451-469
AGATCCGCAGCCAAAGGAATCTGTCACGCC451CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS0288_B13 unknown mRNA.
BT071407.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea glauca clone GQ03609_M07 mRNA sequence.
BT115124.1:311-329
AGATCCGCAGCCAAAGGAATCTGTCACGCC311CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
Picea sitchensis clone WS02812_I08 unknown mRNA.
EF083635.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS02719_F12 unknown mRNA.
EF084929.1:295-313
AGATCCACAGCCAAAGGACTCTTTCACGCC295CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
Picea sitchensis clone WS0298_P08 unknown mRNA.
EF085008.1:304-322
AGATCCGCAGCCAAAGGAATCTGTCACGCC304CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS02742_G06 unknown mRNA.
EF676564.1:180-198
AGATCCACAGCCAAAGGACTCTTCCACGCC180CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTTGTAGACTGAGTGGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTTGTAGACTGAGTGGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.737 | 1.728 | search_plus_done; http://172.18.8.135:50400/match?q=GGTTGTAGACTGAGTGGAG&k=0&no_gap=0&offset=0&limit=50
2.233 | 0.496 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCACTCAGTCTACAACC&k=0&no_gap=0&offset=0&limit=16
2.253 | 0.020 | cgi_end;

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