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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:08:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pinus pinaster root EST, clone RS34C01.
BX679806.1:359-378
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG359GTAAAACTCATGTTCTTGGAACAGACAACCATAGGTTTCTATCTTCTGCC
Pinus pinaster root EST, clone RS63C05.
BX681705.1:480-499
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG480GTAAAACTCATGTTCTTGGAACAGACAACCATAGGTTTCTATCTTCTGGC
RTCNT1_40_G08.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_40_G08_A029 5', mRNA sequence.
CF669130.1:397-416
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG397GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
FLD1_13_B02.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_13_B02_A029 5', mRNA sequence.
CO159419.1:263-282
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG263GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
FLD1_19_G05.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_19_G05_A029 3', mRNA sequence.
CO160185.1:89-108
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG89GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
FLD1_19_G05.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_19_G05_A029 5', mRNA sequence.
CO160263.1:472-491
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG472GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
NDL1_8_F06.b1_A029 Needles control Pinus taeda cDNA clone NDL1_8_F06_A029 3', mRNA sequence.
CO169608.1:8-27
CAAAGAG8GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
Pinus pinaster bud EST.
CT575930.1:492-511
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG492GTAAAACTCATGTTCTTGGAACAGACAACCATAGGTTTCTATCTTCTGCC
COLD1_41_D02.b1_A029 Root cold Pinus taeda cDNA clone COLD1_41_D02_A029 3', mRNA sequence.
CX649728.1:118-137
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG118GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
EST957662 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIIF35 5' end, mRNA sequence.
DN461863.1:305-324
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG305GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
STRS1_69_F10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_69_F10_A034 3', mRNA sequence.
DR025049.1:268-287
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG268GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
RTNIT1_25_E11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_25_E11_A029 3', mRNA sequence.
DR060023.1:87-106
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG87GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
RTAL1_18_B10.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone RTAL1_18_B10_A029 3', mRNA sequence.
DR090893.1:105-124
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG105GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
RTMG1_11_B04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone RTMG1_11_B04_A029 3', mRNA sequence.
DR118078.1:324-343
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG324GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
RTCU1_5_D02.g2_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_5_D02_A029 5', mRNA sequence.
DR742649.1:270-289
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG270GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
EST1160049 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAT41 5' end, mRNA sequence.
DT626973.1:269-288
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG269GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
PtSIFG_0629 Pinus taeda cDNA libraries Pinus taeda STS cDNA clone STRS1_69_F10_A034, sequence tagged site.
BV728666.1:268-287
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG268GTAAAACTCATGTTCTTGGAACAGACAACCATCGGTTTCTATCTTCTGCC
Pinus tabuliformis GID1 mRNA, partial cds.
KJ158988.1:907-926
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG907GTAAAACTCATGTTCTTGGAACAGACGACCATCGGTTTCTATCTTCTGCC
Pinus massoniana gibberellin metabolism protein (GID1) mRNA, complete cds.
MG755268.1:952-971
GCAGAAGAACTCCGGCGAGCGGGCAAAGAG952GTAAAACTCATGTTCTTGGAACAGACGACCATCGGTTTCTATCTTCTGCC
Sambucus nigra genome assembly, chromosome: 1.
OX422207.1:574269588-574269607
GGTGATCGGATCATCTTCCACCGTACCAAT574269588GTAAAACTCATGTTCTTGGAGAAATACAATGTAATCATCTGGCACAACAT
Sambucus nigra genome assembly, chromosome: 5.
OX422211.1:502843140-502843159
GGTGATCGGATCATCTTCCACCGCACCAAT502843140GTAAAACTCATGTTCTTGGAGAAATACAATGTAATCATCTGGCACAACAC
Sambucus nigra genome assembly, chromosome: 5.
OX422211.1:666445851-666445870
GGTGATCGGATCATCTTCCACCGCACCAAT666445851GTAAAACTCATGTTCTTGGAGAAATACAATGTAATCATCTGGCACAACAT
Sambucus nigra genome assembly, chromosome: 8.
OX422214.1:68487559-68487578
TTTAGAACTTTCCACGGATTTCGCACTAAT68487559GTAAAACTCATGTTCTTGGACAAATATAATGTAATCATCTGGCACAACAC
Sambucus nigra genome assembly, chromosome: 14.
OX422220.1:40136431-40136450
GGTGATCGGATCATCTTCCACCGGACCAAT40136431GTAAAACTCATGTTCTTGGAGAAATACAATGTAATCTTCTGGCACAACAC
RTCA1_6_B04.g1_A029 Roots minus calcium Pinus taeda cDNA clone RTCA1_6_B04_A029 5', mRNA sequence.
DR052728.1:561-580
GGCAGAAGATAGAAACCGATGGTTGTCTGT561TCCAAGAACATGAGTTTTACCTCTTTGCCCGCTCGCCGGAGTTCTTCTGC
Pinus sylvestris EST, clone WZ0APSBA3YC02NM1.
HE629046.1:515-534
GGCAGAAGATAGAAACCGATGGTCGTCTGT515TCCAAGAACATGAGTTTTACCTCTTTGCCCGCTCGCCGGAGTTCTTCTGC
Sambucus nigra genome assembly, chromosome: 15.
OX422221.1:208938912-208938931
AGTTTATGCTTGATGATTACATTGTATTTC208938912TCCAAGAACATGAGTTTTACATTGGTGCGGTGGAAAATGATCCAATAACC
Ligustrum vulgare genome assembly, chromosome: 13.
OY743180.1:44637568-44637587
GTGTGGTTTCAGATGATTAAATCACCTTTC44637568TCCAAGAACATGAGTTTTACATAAGGTGTATGGAAGATGATAAATCAACT
Ligustrum vulgare genome assembly, chromosome: 13.
OY743180.1:44655682-44655701
GTGTGGTTTCAGATGATTAAATCACCTTTC44655682TCCAAGAACATGAGTTTTACATAAGGTGTATGGAAGATGATAAATCAACT
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:1439583340-1439583359
AATATTAAATATAGTAAAGGATACATTAAA1439583340TCCAAGAACATGAGTTTTACTCCATTTATTATGCCATTGGACCCACATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTAAAACTCATGTTCTTGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAAAACTCATGTTCTTGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.786 | 0.777 | search_plus_done; http://172.18.8.135:50400/match?q=GTAAAACTCATGTTCTTGGA&k=0&no_gap=0&offset=0&limit=50
0.990 | 0.204 | search_minus_done; http://172.18.8.135:50400/match?q=TCCAAGAACATGAGTTTTAC&k=0&no_gap=0&offset=0&limit=26
0.994 | 0.004 | cgi_end;

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