GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:36:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis clone KBrH039G15, complete sequence.
FP340637.1:23919-23938
AATTTGAAGTTGTAAGATTAAAGACTTAGG23919GTAGAAGGGCATCTATAGACATATGTATACCTTGACAGAGAAGTAACCCC
Brassica rapa subsp. pekinensis clone KBrH119E23, complete sequence.
FP340673.1:61755-61774
AATTTGAAGTTGTAAGATTAAAGACTTAGG61755GTAGAAGGGCATCTATAGACATATGTATACCTTGACAGAGAAGTAACCCC
Sequence 1 from Patent WO9417188.
A39595.1:5699-5718
GGGGTTACTTCTCTGTCAAGGTATACATAT5699GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Sequence 2 from Patent WO9417188.
A39596.1:5699-5718
GGGGTTACTTCTCTGTCAAGGTATACATAT5699GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:4044341-4044360
GGGGTTACTTCTCTGTCAAGGTATACATAT4044341GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica napus cultivar AC Excel acetyl-coenzyme A carboxylase gene, partial cds.
DQ173668.1:2244-2263
GGGGTTACTTCTCTGTCAAGGTATACATAT2244GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica rapa cultivar Shogoin acetyl-coenzyme A carboxylase gene, partial cds.
DQ173669.1:2245-2264
GGGGTTACTTCTCTGTCAAGGTATACATAT2245GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica rapa subsp. chinensis acetyl-coenzyme A carboxylase gene, partial cds.
DQ173670.1:2239-2258
GGGGTTACTTCTCTGTCAAGGTATACATAT2239GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica rapa var. perviridis acetyl-coenzyme A carboxylase gene, partial cds.
DQ173671.1:2245-2264
GGGGTTACTTCTCTGTCAAGGTATACATAT2245GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:3014709-3014728
GGGGTTACTTCTCTGTCAAGGTATACATAT3014709GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica rapa genome, scaffold: A06.
LR031569.1:2975384-2975403
GGGGTTACTTCTCTGTCAAGGTATACATAT2975384GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:3078107-3078126
GGGGTTACTTCTCTGTCAAGGTATACATAT3078107GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
B.napus ACCg8 gene.
X77576.1:5699-5718
GGGGTTACTTCTCTGTCAAGGTATACATAT5699GTCTATAGATGCCCTTCTACCCTAAGTCTTTAATCTTACAACTTCAAATT
Fragum fragum genome assembly, chromosome: 8.
OX336372.1:59017796-59017815
GAAAGTTTTAGCCTTGGACATATTGTCTGA59017796GTCTATAGATGCCCTTCTACTTTATTGTTTGACCCATAGCAAAAGGTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTAGAAGGGCATCTATAGAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTAGAAGGGCATCTATAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=GTAGAAGGGCATCTATAGAC&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTATAGATGCCCTTCTAC&k=0&no_gap=0&offset=0&limit=48
0.147 | 0.008 | cgi_end;

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