GGGenome | Results

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2025-04-11 09:27:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

KS21016O23 KS21 Capsicum annuum cDNA, mRNA sequence.
GD100715.1:142-161

GCTTGATTTGTGAGTGATTGTGCTAATTGA142GTAGCGTTTGTTCCCGTTGTGACGACCCTCTAGTCCTCTGTTAAGTTATG

KS21030B09 KS21 Capsicum annuum cDNA, mRNA sequence.
GD101906.1:142-161

GCTTGATTTGTGAGTGATTGTGCTAATTGA142GTAGCGTTTGTTCCCGTTGTGACGACCCTCTAGTCCTCTGTTAAGTTATG

TSA: Capsicum annuum MGMT_Contig39937 mRNA sequence.
JW090181.1:266-285

GCTTGATTTGTGAGTGATTGTGCTAATTGA266GTAGCGTTTGTTCCCGTTGTGACGACCCTCTAGTCCTCTGTTAAGTTATG

Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 3.
CP124729.1:36232945-36232964

GCTTGATTTGTGAGTGATTGTGCTAATTGA36232945GTAGCGTTTGTTCCCGTTGTGACGACCCTCTAGTCCTCTGTTAAGTTATG

Capsicum annuum Takanotsume DNA, chromosome 3, sequence.
AP026698.1:255068193-255068212

CATAACTTAACAGAGGACTAGAGGGTCGTC255068193ACAACGGGAACAAACGCTACTCAATTAGCACAATCACTCACAAATCAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.281 | 0.273 | search_plus_done; http://172.18.8.135:50400/match?q=GTAGCGTTTGTTCCCGTTGT&k=0&no_gap=0&offset=0&limit=50
0.311 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=ACAACGGGAACAAACGCTAC&k=0&no_gap=0&offset=0&limit=46
0.312 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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