GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:57:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:60822489-60822511
ACAGTTTGGTACTGCAGATACGGGATACCT60822489GTCCTTTCGCTTTTCACGATATCGTTGCAGTGACGCATTTCGGCTTGCCTGAC
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:60006965-60006987
ACAGATGACAGTTTAGTACTGCAGATACCT60006965GTCCTTTCGCTTTTCACGATATCGCTGCAGCGACGCATTTCTGCTTGCCTGAC
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:50860609-50860631
ACAGATGACGGTTTAGTACTGCGGATACCT50860609GTCCTTTCGCTTTTCACGATATCGCTGCAGCGAAGCAATTCTGCTTGCCTGAC
Sequence 75 from patent US 10087458.
MM030913.1:758-780
GCCAGGCAAGCAGAAAAGTCTCGTTGGAGA758GATATCGTGAAAAGCGAAAGGACAGGGGAAGATTAAAGATTAAGAAAAATATT
Sequence 92 from patent US 10337022.
MO168299.1:767-789
GTCAGGCAAGCAGAAATGCGTCGCTGCAGC767GATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAAGGCAACAAACTGACT
Sequence 89 from patent US 10487337.
MO546189.1:767-789
GTCAGGCAAGCAGAAATGCGTCGCTGCAGC767GATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAAGGCAACAAACTGACT
Prunus persica BIG SEEDS 1 (BS1) mRNA, complete cds.
KM667990.1:758-780
GCCAGGCAAGCAGAAAAGTCTCGTTGGAGA758GATATCGTGAAAAGCGAAAGGACAGGGGAAGATTAAAGATTAAGAAAAATATT
Trifolium repens cultivar Huia PEAPOD (PPD) mRNA, complete cds.
MZ736871.1:767-789
GTCAGGCAAGCAGAAATGCGTCGCTGCAGC767GATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAAGGCAACAAACTGACT
Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:4265336-4265358
GTCAGGCAAGCAGAAAAGAGTCGCTGCAGC4265336GATATCGTGAAAAGCGAAAGGACAGGTCAGTACTAAACTGTCATCTGTTTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCCTTTCGCTTTTCACGATATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCTTTCGCTTTTCACGATATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCTTTCGCTTTTCACGATATC&k=0&no_gap=0&offset=0&limit=50
0.285 | 0.188 | search_minus_done; http://172.18.8.135:50400/match?q=GATATCGTGAAAAGCGAAAGGAC&k=0&no_gap=0&offset=0&limit=47
0.289 | 0.004 | cgi_end;

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