GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 01:14:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 64652 from patent US 7569389.
GP695543.1:702-721
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC702GTCTTGTGTTCTGTGTTGGGAAATTGTTAAGTTATTTGATCTCGAATACA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a007O12_SP6.
AM058407.1:273-292
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC273GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a011G15_SP6.
AM059319.1:184-203
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC184GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a018A20_SP6.
AM061218.1:463-482
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC463GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a022O06_SP6.
AM062607.1:534-553
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC534GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a006J21_T7.
AM389231.1:169-188
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC169GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
HC0363 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
CA991712.1:216-235
GTCTACCAGTTTGCTTTTTTTCTTTCTTGC216GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
HC0104 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
CA991943.1:414-433
GTCTACCAGTTTGCTTTTTTTCTTTCTTGC414GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
BN20.046C06F011221 BN20 Brassica napus cDNA clone BN20046C06, mRNA sequence.
CD818635.1:591-610
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC591GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
BN20.046K18F011221 BN20 Brassica napus cDNA clone BN20046K18, mRNA sequence.
CD818769.1:364-383
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC364GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
BN25.044C09F011128 BN25 Brassica napus cDNA clone BN25044C09, mRNA sequence.
CD822132.1:503-522
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC503GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
BN45.041E02F011207 BN45 Brassica napus cDNA clone BN45041E02, mRNA sequence.
CD834293.1:401-420
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC401GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
24RDBNH_UP_018_G01_09JAN2004_003 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN731371.1:694-713
TGTCTACCAGTTTGCTTTTTTCTTTTCTGC694GTCTTGTGTTCTGTGTTGGG
25RDBNM_UP_016_G01_16JAN2004_003 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
CN733767.1:695-714
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC695GTCTTGTGTTCTGTGTTGGGAGATTGTAANGTTATTTGATCTCGAATAC
26RDBNT_UP_011_D05_20JAN2004_041 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN736044.1:695-714
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC695GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
RT1621 Chinese cabbage root library Brassica rapa subsp. pekinensis cDNA clone RT1621 5', mRNA sequence.
CV433158.1:452-471
GTCTACCAGTTTGCTTTTTTTCTTTCTTGC452GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTC
38RDBRM_UP_018_B08_01APR2004_062 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267107.1:313-332
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC313GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
20ACACDS_UP_005_E12_08MAR2004_088 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
CX278335.1:230-249
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC230GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
16ACDHDS_UP_004_D05_08APR2004_041 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
CX279973.1:218-237
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC218GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
HC2042 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN191902.1:138-157
GTCTACCAGTTTGCTTTTTTTCTTTCTTGC138GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
62ETGS52_RP_008_C03_03JAN2005_027 Brassica napus 12075 complete Germinating seeds library Brassica napus cDNA 5', mRNA sequence.
DY000387.1:544-563
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC544GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGGATACA
54ACDHPE_UP_008_C12_24AUG2004_092 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY001789.1:315-334
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC315GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
54ACDHPE_UP_024_D09_09NOV2004_073 Brassica napus DH12075 PEG Brassica napus cDNA 5', mRNA sequence.
DY003205.1:477-496
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC477GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
19ACACYS_UP_004_D12_29JAN2004_090 Brassica napus 19ACACYS Brassica napus cDNA 5', mRNA sequence.
DY004066.1:710-729
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC710GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGAT
19ACACYS_UP_017_A02_29OCT2004_016 Brassica napus 19ACACYS Brassica napus cDNA 5', mRNA sequence.
DY005034.1:456-475
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC456GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
BNDH4DCT_UP_028_F05_17DEC2004_037 Brassica napus seeds BNDH4DCT Brassica napus cDNA 5', mRNA sequence.
DY007219.1:714-733
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC714GTCTTGTGTTCTGTGTTGGGAGAATGTTAAGTTATTTG
BNDH4DCT_UP_031_B03_17DEC2004_029 Brassica napus seeds BNDH4DCT Brassica napus cDNA 5', mRNA sequence.
DY007424.1:369-388
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC369GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
63JKCOT5_T3_008_E06_04JAN2005_040 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY017899.1:695-714
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC695GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
63JKCOT5_T3_014_B09_22JAN2005_077 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY018399.1:480-499
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC480GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
53COT5_T3_009_F11_19JUL2004_085 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020744.1:707-726
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC707GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGA
53COT2_T3_002_F04_28JUN2004_022 Brassica napus 36hr germinating seed library 53COT2 Brassica napus cDNA 5', mRNA sequence.
DY024302.1:334-353
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC334GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
53COT2_T3_005_H06_28JUN2004_034 Brassica napus 36hr germinating seed library 53COT2 Brassica napus cDNA 5', mRNA sequence.
DY024578.1:678-697
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC678GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
22FGYLU_UP_002_A02_01FEB2004_016 Brassica napus 22FGYLU Brassica napus cDNA 5', mRNA sequence.
DY028465.1:700-719
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC700GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
15ACDHYS_UP_003_G02_05MAR2004_004 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE400437.1:694-713
TGTCTACCAGTTTGGTTTTTTCTTTTCTGC694GTCTTGTGTTCTGTGTTGGG
16ACDHDS_UP_012_D05_15OCT2004_041 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE402590.1:467-486
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC467GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
16ACDHDS_UP_018_B07_15OCT2004_061 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE403028.1:174-193
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC174GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
16ACDHDS_UP_027_F04_26OCT2004_022 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE403822.1:298-317
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC298GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
16ACDHDS_UP_027_G06_26OCT2004_036 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE403836.1:505-524
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC505GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
17ACDHMS_UP_023_C07_28OCT2004_059 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
EE405617.1:559-578
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC559GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
21ACACMS_UP_014_E09_05NOV2004_071 Brassica napus 21ACACMS Brassica napus cDNA 5', mRNA sequence.
EE408250.1:400-419
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC400GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
55ACACPE_UP_019_A12_21DEC2004_096 Brassica napus AC Excell Brassica napus cDNA 5', mRNA sequence.
EE411215.1:715-734
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC715GTCTTGTGTTCTGTGTTGGGAGAATGTTAAGTTATTTGATCTCGAATACA
57ACPE6_UP_002_G04_13SEP2004_020 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE414627.1:228-247
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC228GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
57ACPE6_UP_014_E06_10SEP2004_040 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE415605.1:338-357
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC338GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
57ACPE6_UP_027_D05_20SEP2004_041 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE416715.1:325-344
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC325GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
57ACPE6_UP_028_H08_20SEP2004_050 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE416855.1:348-367
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC348GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
57ACPE6_UP_028_H12_20SEP2004_082 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE416859.1:478-497
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC478GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
59ACAB6_UP_010_C07_22JUL2004_059 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE420364.1:494-513
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC494GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
59ACAB6_UP_011_H07_23JUL2004_049 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE420510.1:293-312
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC293GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
59ACAB6_UP_030_G05_27JUL2004_035 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE422165.1:714-733
ATTGTCTACCAGTTTGCTTTTCTTTTCTGC714GTCTTGTGTTCTGTGTTGGGAGATTGTT
60ACAB48_UP_004_F04_01OCT2004_022 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE422486.1:474-493
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC474GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
31ETGS12_UP_004_C12_12MAR2004_092 Brassica napus 31ETGS12 Brassica napus cDNA 5', mRNA sequence.
EE423780.1:457-476
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC457GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052N08, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189387.2:3313-3332
GTCTACCAGTTTGCTTTTTTTCTTTCTTGC3313GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
AC189317.2:58984-59003
GTCTACCAGTTTGCTTTTTTTCTTTCTTGC58984GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica oleracea translationally controlled tumor protein (TCTP) mRNA, complete cds.
AF418663.1:715-734
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC715GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:50070429-50070448
ATTGTCTACCAGTTTGCTTTTCTTTCTTGC50070429GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Zea mays clone 9209 mRNA sequence.
DQ244567.1:747-766
TGTCTACCAGTTTGCTTTTTTCTTTCTTGC747GTCTTGTGTTCTGTGTTGGGAGATTGTTAAGTTATTTGATCTCGAATACA
Volucella zonaria genome assembly, chromosome: 1.
OZ014530.1:38994433-38994452
ACTTAATTTCTGCAACACCAGCAAGAAGCA38994433GTCTTGTGTTCTGTGTTGGGCATTCGATATTACACATGAGCCTTCTAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTCTTGTGTTCTGTGTTGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCTTGTGTTCTGTGTTGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.269 | 2.260 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTTGTGTTCTGTGTTGGG&k=0&no_gap=0&offset=0&limit=50
2.338 | 0.068 | search_minus_done; http://172.18.8.135:50400/match?q=CCCAACACAGAACACAAGAC&k=0&no_gap=0&offset=0&limit=0
2.338 | 0.000 | cgi_end;

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