GGGenome | Results

2025-04-17 03:29:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

GA__Ea0017A10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0017A10f, mRNA sequence.
BG442345.1:515-534

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG515GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

GR__Eb013I20.r GR__Eb Gossypium raimondii cDNA clone GR__Eb013I20 3', mRNA sequence.
CO113358.1:94-113

TTTTCTCGCTGTCCATAAGTGCAAAAGTCG94GTGAACTTTTGGGGACGTGTTCTTACTGAGGTTCAGAGCCTTCATTCGAG

GR__Eb019B17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb019B17 3', mRNA sequence.
CO116714.1:105-124

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG105GTGAACTTTTGGGGACGTGTTCTTACTGAGGTTCAGAGCCTTCATTCGAG

GR__Eb03H12.f GR__Eb Gossypium raimondii cDNA clone GR__Eb03H12 5', mRNA sequence.
CO122022.1:89-108

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG89GTGAACTTTTGGGGACGTGTTCTTACTGAGGTTCAGAGCCTTCATTCGAG

G.hir-8-10 DAA bolls drought stressed751 8-10 DAA cotton bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN803875.1:99-118

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG99GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

CM053F01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457278.1:93-112

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG93GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1056282 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT545642.1:111-130

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG111GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

EST1057359 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT546719.1:102-121

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG102GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1057622 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT546982.1:126-145

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG126GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

EST1057623 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT546983.1:126-145

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG126GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

EST1058420 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547780.1:74-93

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG74GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1058421 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547781.1:74-93

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG74GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1066073 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT555433.1:84-103

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG84GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1070549 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559909.1:136-155

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG136GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

EST1075090 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564450.1:114-133

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG114GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1077564 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566924.1:75-94

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG75GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1078340 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT567700.1:101-120

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG101GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1078374 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT567734.1:114-133

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG114GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1079933 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569293.1:120-139

TTTTCTCGCTGTAAATAAGTGCAAGAGTCG120GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST1080614 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569974.1:104-123

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG104GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

EST1082112 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT571472.1:78-97

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG78GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

EST1084188 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT573548.1:59-78

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG59GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

UFL_505_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES799024.1:94-113

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG94GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

UFL_340_53 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832495.1:115-134

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG115GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

UFL_692_81 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES850376.1:84-103

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG84GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

127D08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV487790.1:86-105

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG86GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

sg152C05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV498890.1:117-136

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG117GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

F07_P-31_061 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX164129.1:74-93

TCCANAGAATTCGGCACGAGGCNTTANTCG74GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

H11_P10_094 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX165154.1:128-147

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG128GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

EST006598 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 32-D23 5', mRNA sequence.
GR713398.1:123-142

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG123GTGAACTTTTGGGGACGTGTTCTTACTGAGGTTCAGAGCCTTCATTCGAG

1P6-7-H2-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG453112.1:75-94

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG75GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

mhczaa0_003401.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_003401.z1, mRNA sequence.
JG852555.1:254-273

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG254GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

A03-058A3 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK790732.1:241-260

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG241GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTTGAG

A01-089A1 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK790845.1:136-155

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG136GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTTGAG

B04-36B04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791227.1:155-174

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG155GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

E11-77E11 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793253.1:155-174

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG155GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

H01-071H1 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794365.1:155-174

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG155GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

F02-14-F02 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794712.1:159-178

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG159GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

C03-083C3 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795066.1:155-174

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG155GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

ndcxb0_0001_G01.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ371299.1:284-303

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG284GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

ndcxc0_0023_D11.ab1 Upland cotton seedling roots at 0h control (ndcxc) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ375803.1:128-147

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG128GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTTGAG

ndcxe0_0024_E11.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ381567.1:123-142

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG123GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTTGAG

ndcxe0_0031_C02.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ382139.1:112-131

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG112GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTTGAG

ndcxf0_0032_F09.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ385120.1:127-146

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG127GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

ndcxg0_0017_C05.ab1 Upland cotton seedling roots at 12h control (ndcxg) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ386981.1:100-119

TTTTCTCGCTGTAAATAGGTGCAAAAGTCG100GTGAACTTTTGGGGACGTGTTCTTTCTGAGGTTCAGAGCCTTCATTCGAG

Gossypium raimondii isolate D5-4 chromosome D5_11.
CP032563.1:2962784-2962803

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG2962784GTGAACTTTTGGGGACGTGTTCTTACTGAGGTTCAGAGCCTTCATTCGAG

Gossypium herbaceum isolate Zhongcao1 chromosome 11.
CP106686.1:3062593-3062612

TTTTCTCGCTGTAAATAAGTGCAAAAGTCG3062593GTGAACTTTTGGGGACGTGTTCTTACTTAGGTTCAGAGCCTTCATTCGAG

Harmonia axyridis genome assembly, chromosome: 5.
OU611931.1:5732962-5732981

ACTTCAATATAAAGGATGTTTCAAAATTAC5732962GTGAACTTTTGGGGACGTGTTGGTATGACTAATTTGCTGTCGTTTGAGCC

rmhcyb0_000365 SSH library of differentially expressed genes response to medium changes during cotton somatic embryogenesis Gossypium hirsutum cDNA clone rmhcyb0_000365, mRNA sequence.
FG551397.1:404-423

CTCGAATGAAGGCTCTGAACCTCAGAAAGA404ACACGTCCCCAAAAGTTCACCGACTTTTGCACTTATTTACAGCGAGAAAA

Gossypium hirsutum clone BAC Chr11_10_CM140_NAU1232 sequence, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
MW008618.1:46705-46724

CTCGAATGAAGGCTCTGAACCTAAGTAAGA46705ACACGTCCCCAAAAGTTCACCGACTTTTGCACTTATTTACAGCGAGAAAA

Gossypioides kirkii chromosome KI_11.
CP032253.1:53062031-53062050

CTCAAATGAAGGCTCTGAACCTTGGTAAGA53062031ACACGTCCCCAAAAGTTCACCGACTTTTGCACTTATTTACAGTGAGAAAA

Gossypium turneri isolate D10-2 chromosome D10_07.
CP032577.1:34551995-34552014

CTCGAATGACGGCTCTGAACCTCAGTAAGA34551995ACACGTCCCCAAAAGTTCACCGACTTTTGCACTTATTTACAGCGAGGAAA

Dasypolia templi genome assembly, chromosome: Z.
OY743136.1:8310969-8310988

ACGTGACATAGAAAAGTGAAACTCCTAATA8310969ACACGTCCCCAAAAGTTCACTAATACGAAACACTTTATCGAATGCACGCT

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
3.379 | 3.370 | search_plus_done; http://172.18.8.135:50400/match?q=GTGAACTTTTGGGGACGTGT&k=0&no_gap=0&offset=0&limit=50
3.519 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=ACACGTCCCCAAAAGTTCAC&k=0&no_gap=0&offset=0&limit=2
3.523 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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