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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 05:09:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

40-E022825-021-016-O10-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022O1016Q, mRNA sequence.
CX192734.1:62-81
ATTTGTATATAATCAAATCACACAAGACTC62GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTT
63JKCOT5_T3_020_B02_22JAN2005_014 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY021570.1:368-387
TATAAACAATCAATCAATCACACAAGACTC368GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
53COT2_T3_016_F12_03SEP2004_086 Brassica napus 36hr germinating seed library 53COT2 Brassica napus cDNA 5', mRNA sequence.
DY025503.1:88-107
TATAAACAATCAATCAATCACACAAGACTC88GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
44JK5DM_UP_040_C02_01JUL2006_012 Brassica napus 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES985446.1:76-95
ATTTGTATATAATCAAATCACACAAGACTC76GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTT
BR028714 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-126G06 5', mRNA sequence.
EX044070.1:46-65
TATAAACAATAAATCAATCACACAAGACTC46GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
BR085365 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-013C09 5', mRNA sequence.
EX099075.1:100-119
TATAAACAATAAATCAATCACACAAGACTC100GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
BNAPO3GH_T3_003_C01_13JULY2007_011 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456005.1:12-31
ACACAAGACTC12GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_20861.
FX703617.1:100-119
TATAAACAATAAATCAATCACACAAGACTC100GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31052.
FX739256.1:98-117
TATAAACAATAAATCAATCACACAAGACTC98GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB032C14, complete sequence.
AC189306.2:104638-104657
TATAAACAATAAATCAATCACACAAGACTC104638GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:65341686-65341705
ATTTGTATATAATCAAATCACACAAGACTC65341686GTGAGAAGAGGACGAAACGCGTTTTCTGTGCCGAGAGTCAATTCAACCTT
Brassica napus microsatellite Y5F115-1 sequence.
JX131202.1:109-128
CATTTGTATATAATCAATCACACAAGACTC109GTGAGAAGAGGACGAAACGC
Eumerus sabulonum genome assembly, chromosome: 1.
OX645060.1:10359409-10359428
TTTATTTCTGGACTTTGTTTGGCTTTTATT10359409GTGAGAAGAGGACGAAACGCAGGATATTCGAATGGCGGAAACTGTTTAAC
Sisyra nigra genome assembly, chromosome: 1.
OY292313.1:3663173-3663192
TCTCGATACGATCTGTCTCTTGAGAAACGC3663173GTGAGAAGAGGACGAAACGCGAGAATTAACGCCGTGTAGTTTGCGGGGCG
KBrB032C14F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB032C14, genomic survey sequence.
DX034359.1:295-314
GAGGTTGAATTGACTCTCGGCACAGAAAAC295GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTTATTGTTTATA
KBrB130H03R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130H03, genomic survey sequence.
ED537270.1:288-307
GAGGTTGAATTGACTCTCGGCACAGAAAAC288GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTTATTGTTTATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH095B11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC241164.1:63234-63253
GAGGTTGAATTGACTCTCGGCACAGAAAAC63234GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTTATTGTTTATA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:9981614-9981633
GAGGTTGAATTGACTCTCGGCACAGAAAAC9981614GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:9958473-9958492
GAGGTTGAATTGACTCTCGGCACAGAAAAC9958473GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:13974184-13974203
AAGGTTGAATTGACTCTCGGCACAGAAAAC13974184GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTTGATTATATACAAAT
Brassica rapa genome, scaffold: A03.
LR031572.1:9815569-9815588
GAGGTTGAATTGACTCTCGGCACAGAAAAC9815569GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:14036975-14036994
AAGGTTGAATTGACTCTCGGCACAGAAAAC14036975GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTTGATTATATACAAAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:9938197-9938216
GAGGTTGAATTGACTCTCGGCACAGAAAAC9938197GCGTTTCGTCCTCTTCTCACGAGTCTTGTGTGATTGATTGATTGTTTATA
Heterobilharzia americana genome assembly, chromosome: 3.
OX104129.1:46905003-46905022
CAAACCTCCTTGATTCTTTTCCCCGATCCA46905003GCGTTTCGTCCTCTTCTCACAGCTCCTCACTGTTTGTTGCATGATCCAGT

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Maximum 100000 results can be retrieved in various formats shown below:

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