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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:44:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum melongena mRNA, clone: PER07J09, 5'end, expressed in pericarp at 10d after anthesis.
FS041600.1:411-430
CTATCTGTGTATCAGTTTATTTTCCTTTTT411GTGATTTGCGAATGTGTTCGGCCTTCGGATCGTTTATGTGTATTAATATG
Solanum melongena mRNA, clone: PLA04L15, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045005.1:264-283
CTATCTGTGTATCAGTTTATTTTCCTTTTT264GTGATTTGCGAATGTGTTCGGCCTTCGGATCGTTTATGTGTATTAATATG
Solanum melongena mRNA, clone: SEP07B19, 5'end, expressed in sepal at 10d after anthesis.
FS062034.1:412-431
CTATCTGTGTATCAGTTTATTTTCCTTTTT412GTGATTTGCGAATGTGTTCGGCCTTCGGATCGTTTATGTGTATTAATATG
TSA: Megalopta genalis Contig5630.Mege mRNA sequence.
JI141651.1:37-56
TGTTTTTGATCATAATTATTGTTTGCCTCT37GTGATTTGCGAATGTGTTCGGAAAGCACGCCGACAAATAAAACTGCCGAC
Heligmosomoides polygyrus polygyrus genome assembly, chromosome: II.
OX377202.1:39268904-39268923
TTTCTCTGACGAGGGTGACGATGAAATGAT39268904GTGATTTGCGAATGTGTTCGCGAACAGAATACTTGCACAGCTTTACAACA
Solanum melongena mRNA, clone: PER07J09, 3'end, expressed in pericarp at 10d after anthesis.
FS041601.1:69-88
CATATTAATACACATAAACGATCCGAAGGC69CGAACACATTCGCAAATCACAAAAAGGAAAATAAACTGATACACAGATAG
Solanum melongena mRNA, clone: PER07P16, 3'end, expressed in pericarp at 10d after anthesis.
FS041870.1:69-88
CATATTAATACACATAAACGATCCGAAGGC69CGAACACATTCGCAAATCACAAAAAGGAAAATAAACTGATACACAGATAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGATTTGCGAATGTGTTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGATTTGCGAATGTGTTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.312 | 0.304 | search_plus_done; http://172.18.8.135:50400/match?q=GTGATTTGCGAATGTGTTCG&k=0&no_gap=0&offset=0&limit=50
0.469 | 0.156 | search_minus_done; http://172.18.8.135:50400/match?q=CGAACACATTCGCAAATCAC&k=0&no_gap=0&offset=0&limit=45
0.470 | 0.001 | cgi_end;

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