GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 14:51:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR722621.1:23610535-23610556
TATGTATGTGTCTGTTACAAACGAAAACTG23610535GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR812266.1:23051774-23051795
TATGTATGTGTCTGTTACAAACGAAAACTG23051774GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR812975.1:23610535-23610556
TATGTATGTGTCTGTTACAAACGAAAACTG23610535GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828113.1:20007735-20007756
TATGTATGTGTCTGTTACAAACGAAAACTG20007735GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828137.1:21569353-21569374
TATGTATGTGTCTGTTACAAACGAAAACTG21569353GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828165.1:23703377-23703398
TATGTATGTGTCTGTTACAAACGAAAACTG23703377GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828179.1:23497786-23497807
TATGTATGTGTCTGTTACAAACGAAAACTG23497786GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828186.1:21276397-21276418
TATGTATGTGTCTGTTACAAACGAAAACTG21276397GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR865400.1:20668924-20668945
TATGTATGTGTCTGTTACAAACGAAAACTG20668924GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR890101.1:24879446-24879467
TATGTATGTGTCTGTTACAAACGAAAACTG24879446GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
OU015686.1:17803538-17803559
TATGTATGTGTCTGTTACAAACGAAAACTG17803538GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OU015706.1:21407157-21407178
TATGTATGTGTCTGTTACAAACGAAAACTG21407157GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OU701468.1:15094102-15094123
TATGTATGTGTCTGTTACAAACGAAAACTG15094102GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX459928.1:22171562-22171583
TATGTATGTGTCTGTTACAAACGAAAACTG22171562GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX459935.1:25422727-25422748
TATGTATGTGTCTGTTACAAACGAAAACTG25422727GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX459996.1:24349716-24349737
TATGTATGTGTCTGTTACAAACGAAAACTG24349716GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460010.1:25590235-25590256
TATGTATGTGTCTGTTACAAACGAAAACTG25590235GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460017.1:25259582-25259603
TATGTATGTGTCTGTTACAAACGAAAACTG25259582GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460024.1:24665612-24665633
TATGTATGTGTCTGTTACAAACGAAAACTG24665612GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460031.1:25056219-25056240
CATGTATGTGTCTGTTACAAACGAAAACTG25056219GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460073.1:28682704-28682725
TATGTATGTGTCTGTTACAAACGAAAACTG28682704GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460087.1:24452401-24452422
TATGTATGTGTCTGTTACAAACGAAAACTG24452401GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460094.1:27791365-27791386
CATGTATGTGTCTGTTACAAACGAAAACTG27791365GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460136.1:28843032-28843053
CATGTATGTGTCTGTTACAAACGAAAACTG28843032GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460192.1:26618932-26618953
TATGTATGTGTCTGTTACAAACGAAAACTG26618932GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460206.1:26680812-26680833
TATGTATGTGTCTGTTACAAACGAAAACTG26680812GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460213.1:23398819-23398840
TATGTATGTGTCTGTTACAAACGAAAACTG23398819GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460241.1:27863425-27863446
TATGTATGTGTCTGTTACAAACGAAAACTG27863425GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460262.1:24723449-24723470
TATGTATGTGTCTGTTACAAACGAAAACTG24723449GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460269.1:28257132-28257153
TATGTATGTGTCTGTTACAAACGAAAACTG28257132GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX460297.1:27538536-27538557
TATGTATGTGTCTGTTACAAACGAAAACTG27538536GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590739.1:25081069-25081090
TATGTATGTGTCTGTTTCAAACGAAAACTG25081069GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCGTGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590753.1:25121984-25122005
TATGTATGTGTCTGTTACAAACGAAAACTG25121984GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590767.1:24627797-24627818
TATGTATGTGTCTGTTACAAACGAAAACTG24627797GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare genome assembly, chromosome: 6H.
OX638658.1:25449205-25449226
TATGTATGTGTCTGTTACAAACGAAAACTG25449205GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638747.1:25151960-25151981
TATGTATGTGTCTGTTACAAACGAAAACTG25151960GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638768.1:27326400-27326421
TATGTATGTGTCTGTTACAAACGAAAACTG27326400GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638782.1:25120889-25120910
CATGTATGTGTCTGTTACAAACGAAAACTG25120889GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638782.1:25175098-25175119
TATGTATGTGTCTGTTACAAACGAAAACTG25175098GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638803.1:24990832-24990853
TATGTATGTGTCTGTTACAAACGAAAACTG24990832GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638831.1:24599702-24599723
TATGTATGTGTCTGTTACAAACGAAAACTG24599702GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638831.1:24620081-24620102
TATGTATGTGTCTGTTACAAACGAAAACTG24620081GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638831.1:24640479-24640500
TATGTATGTGTCTGTTACAAACGAAAACTG24640479GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638831.1:24694333-24694354
TATGTATGTGTCTGTTACAAACGAAAACTG24694333GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638831.1:24748154-24748175
TATGTATGTGTCTGTTACAAACGAAAACTG24748154GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638873.1:23758216-23758237
CATGTATGTGTCTGTTACAAACGAAAACTG23758216GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAATTTGGTGTGCCAAT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638880.1:27726639-27726660
TATGTATGTGTCTGTTACAAACGAAAACTG27726639GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737397.1:40395642-40395663
TATGTATGTGTCTGTTACAGACGAAAACTG40395642GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737404.1:36382892-36382913
TATGTATGTGTCTGTTACAGACGAAAACTG36382892GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737414.1:27880469-27880490
TATGTGTGTGTCTGTTACAGACGAAAACTG27880469GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737421.1:32179577-32179598
TATGTGTGTGTCTGTTACAGACGAAAACTG32179577GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737501.1:36017769-36017790
TATGTATGTGTCTGTTACAGACGAAAACTG36017769GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_3.
OY737508.1:31502700-31502721
TATGTATGTGTCTGTTACAGACGAAAACTG31502700GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737515.1:32532555-32532576
TATGTATGTGTCTGTTACAGACGAAAACTG32532555GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737530.1:33696743-33696764
TATGTATGTGTCTGTTACAGACGAAAACTG33696743GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737544.1:33663383-33663404
TATGTATGTGTCTGTTACAGACGAAAACTG33663383GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737616.1:37736986-37737007
TATGTATGTGTCTGTTACAGACGAAAACTG37736986GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737623.1:34438934-34438955
TATGTATGTGTCTGTTACAGACGAAAACTG34438934GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737637.1:32919094-32919115
TATGTATGTGTCTGTTACAGACGAAAACTG32919094GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737645.1:32729805-32729826
TATGTATGTGTCTGTTACAGACGAAAACTG32729805GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737652.1:32558771-32558792
TATGTATGTGTCTGTTACAGACGAAAACTG32558771GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_3.
OY737659.1:32621850-32621871
TATGTATGTGTCTGTTACAGACGAAAACTG32621850GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGCTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737666.1:34967802-34967823
TATGTATGTGTCTGTTACAGACGAAAACTG34967802GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_1.
OY737871.1:28515946-28515967
TATGTATGTGTCTGTTACAGACGAAAACTG28515946GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737892.1:29088594-29088615
TATGTATGTGTCTGTTAGAGACGAAAACTG29088594GTGCCGGTTCTCCGTGCTAATGCTTAATTATCCATGAGTTTGGTGTGCCAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGCCGGTTCTCCGTGCTAATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGCCGGTTCTCCGTGCTAATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.136 | 0.126 | search_plus_done; http://172.18.8.135:50400/match?q=GTGCCGGTTCTCCGTGCTAATG&k=0&no_gap=0&offset=0&limit=50
0.197 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=CATTAGCACGGAGAACCGGCAC&k=0&no_gap=0&offset=0&limit=0
0.197 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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