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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 16:46:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Medicago truncatula EST MtBB03H12F1 : T3 end of clone MtBB03H12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL373978.1:450-468
GTGATGGCTTATTCACCGGTGGTTTCGTTT450GTGGTGGCCTATAAGCAGGATAAAGGTAATATTCAGCAAA
Medicago truncatula EST MtBB03H12R1 : T7 end of clone MtBB03H12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL373979.1:437-455
GTGATGGCTTATTCACCGGTGGTTTCGTTT437GTGGTGGCCTATAAGCAGGATAAAGGTAATATTCAGCAAGCCTTGAGGA
Medicago arabica genome assembly, chromosome: 4.
OX326967.1:4172825-4172843
GTGATGGCTTATTCACCGGTGGTTTCGTTT4172825GTGGTGGCCTATAAGCAGGATTAAGGTAATATTCAGCAAATCCTTGAGG
Hyperoplus immaculatus genome assembly, chromosome: 20.
OX442368.1:2915139-2915157
CAGCAGCTCAGGAGGTCAGGCTCACTAACT2915139CCTGCTTATAGGCCACCACTGCTTCCTTACATAGCCTGATATCATTTAC
Ammodytes marinus genome assembly, chromosome: 19.
OX465163.1:5974849-5974867
CAGCAGCTCAGGAGGTCAGGCTCACTAACT5974849CCTGCTTATAGGCCACCACTGCTTCCTTACATAGCCTGATATCATTTAC
Medicago truncatula EST MtBB02B02F1 : T3 end of clone MtBB02B02 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL373662.1:103-121
CCTCAAGGCTTTGCTGAATATTACCTTTAT103CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Medicago truncatula EST MtBB02B02R1 : T7 end of clone MtBB02B02 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL373663.1:67-85
CCTCAAGGCTTTGCTGAATATTACCTTTAT67CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Medicago truncatula EST MtBB46F06R1 : T7 end of clone MtBB46F06 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL379658.1:22-40
TTTGCTGAATATTACCTTTAT22CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Medicago truncatula EST MtBB50B12F1 : T3 end of clone MtBB50B12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380066.1:111-129
CCTCAAGGCTTTGCTGAATATTACCTTTAT111CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Medicago truncatula EST MtBB50B12R1 : T7 end of clone MtBB50B12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380067.1:95-113
CCTCAAGGCTTTGCTGAATATTACCTTTAT95CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Medicago truncatula EST MtBB51B05F1 : T3 end of clone MtBB51B05 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL380218.1:90-108
CCTCAAGGCTTTGCTGAATATTACCTTTAT90CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
EST482818 GVN Medicago truncatula cDNA clone pGVN-63D2 5' end, mRNA sequence.
BG581088.1:91-109
CCTCAAGGCTTTGCTGAATATTACCTTTAT91CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
MTNAK80TKM KVKC Medicago truncatula cDNA clone pKVKC-11G8, mRNA sequence.
BQ255437.1:126-144
CCTCAAGGCTTTGCTGAATATTACCTTTAT126CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
EST670117 MTUS Medicago truncatula cDNA clone MTUS-19G12, mRNA sequence.
CF069396.1:86-104
CCTCAAGGCTTTGCTGAATATTACCTTTAT86CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
AC0506 NOLLY Medicago truncatula cDNA 5', mRNA sequence.
DY615437.1:48-66
CCTCAAGGCTTTGCTGAATATTACCTTAAT48CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
TSA: Medicago truncatula Contig12659.Metrroot mRNA sequence.
JR368113.1:136-154
CCTCAAGGCTTTGCTGAATATTACCTTTAT136CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Medicago truncatula clone mth2-75d20, WORKING DRAFT SEQUENCE, 16 unordered pieces.
AC234024.5:35615-35633
CCTCAAGGCTTTGCTGAATATTACCTTTAT35615CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Cenchrus americanus genome assembly, chromosome: PMC23DB4.
OX387242.1:22854819-22854837
GGACCGCCCACGCGTCCCCTTTCGCGCCGC22854819CCTGCTTATAGGCCACCACCGCACCGGCCCGGATGCCCCAGAAACCCTA
Cenchrus americanus genome assembly, chromosome: PMC23DB4.
OX387242.1:22864953-22864971
GGACCGCCCACGCGTCCCCTTTCGCGCCGC22864953CCTGCTTATAGGCCACCACCGCACCGGCCCGGATGCCCCAGAAACCCTA
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:63085035-63085053
CCTCAAGGCTTTGCTGAATATTACCTTAAT63085035CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
Cenchrus americanus genome assembly, chromosome: Pg4.
OZ001408.1:27144616-27144634
GGACCGCCCACGCGTCCCCTTTCGCGCCGC27144616CCTGCTTATAGGCCACCACCGCACCGGCCCGGATGCCCCAGAAACCCTA
Cenchrus americanus genome assembly, chromosome: Pg4.
OZ001408.1:27154740-27154758
GGACCGCCCACGCGTCCCCTTTCGCGCCGC27154740CCTGCTTATAGGCCACCACCGCACCGGCCCGGATGCCCCAGAAACCCTA
M.truncatula ENOD12 gene.
X68032.1:413-431
CCTCAAGGCTTTGCTGAATATTACCTTTAT413CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
M.sativa (W2) ENOD12B gene.
X74355.1:48-66
CCTCAAGGCTTTGCTGAATATTACCTTAAT48CCTGCTTATAGGCCACCACAAACGAAACCACCGGTGAATAAGCCATCAC
M.sativa (k93) ENOD12 gene.
X74356.1:48-66
CCTCAAGGCTTTGCTGAATATTACCTTAAT48CCTGCTTATAGGCCACCACAAACAAAACCACCGGTGAATAAGCCACCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTGGTGGCCTATAAGCAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGGTGGCCTATAAGCAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGTGGCCTATAAGCAGG&k=0&no_gap=0&offset=0&limit=50
0.308 | 0.205 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGCTTATAGGCCACCAC&k=0&no_gap=0&offset=0&limit=47
0.322 | 0.015 | cgi_end;

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