GGGenome | Results

2025-04-16 22:07:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

64-L105746-1033-033-P16-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-033-P16 3', genomic survey sequence.
JY283748.1:24-45

TACACTGTGATCTCCACATCATA24GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

41-L105200-1033-009-A11-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-009-A11 3', genomic survey sequence.
JY290390.1:147-168

TTTTGGATACACTATGATCTCCACATCATA147GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

50-L106966-1033-074-D14-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-074-D14 5', genomic survey sequence.
JY306352.1:500-521

TTTTGGATACACTGTGATCTCCATATCATA500GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

63-L107169-1033-079-N15-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-079-N15 5', genomic survey sequence.
JY336530.1:381-402

TTTTGGATACACTATGATCTCCACATCATA381GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

33-L108510-1033-134-A09-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-134-A09 5', genomic survey sequence.
JY360548.1:123-144

TTTTGGATACGCTGTGATATTCACATCATA123GTGTAGGGGTTGAATATAGGTCTAATGAACTGACTAAAGAATTCGGTATAAA

83-L108786-1033-140-E22-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-140-E22 5', genomic survey sequence.
JY361309.1:425-446

TTTTGGATACACTGTGATCTCCACATCATA425GTGTAGGGGTTGAATATAGGTCTAAGGAATTGACTAAAGAGTTAGGTATAAA

54-L110272-1033-189-L13-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-189-L13 3', genomic survey sequence.
JY397818.1:163-184

TTTTGGATACACTGTGATCTCCATATCATA163GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:35353852-35353873

TTTTGGATACACCGTGATCTCCACATCATA35353852GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:28360608-28360629

TTTTGGATACACTGTGATCTCCACATCATA28360608GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:31282809-31282830

TTTTGGATACACTATGATCTCCACATCATA31282809GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:31614985-31615006

TTTTGGATACACTGTGATCTCCACATCATA31614985GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:36819888-36819909

TTTGGATACACTCGTGATCTCCACATCATA36819888GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:24875751-24875772

TTTTGGATACACTGTGATCTCCACATCATA24875751GTGTAGGGGTTGAATATAGGTCTAATGAATTGACAAACGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:32960668-32960689

TTTTGGATACACTGTGATCTCCACATCATA32960668GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTATGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:42112435-42112456

TTTTGGATACACTGTGATCTACACATCATA42112435GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:42116697-42116718

TTTGGATACACCTGTGATCTACACATCATA42116697GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392554.1:6035416-6035437

TTTTGGATACACTGTGATCTCCATATCATA6035416GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGATATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392554.1:32959600-32959621

TTTTGGATACACTGTGATCTCCATATCATA32959600GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392554.1:48352797-48352818

TTTTGGATACACTGTGATCTCCACATCATA48352797GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAAGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:19367428-19367449

TTTTGGATACGCTGTGATCTTCACATCATA19367428GTGTAGGGGTTGAATATAGGTCTAATGAACTGACTAAAGAGTTAGGTGTAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:38844687-38844708

TTTTGGATACGATGTGATCTCCATATAATA38844687GTGTAGGGGTTGAATATAGGTCTAATGGATTGCTTAAAGAGTTATGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:34452566-34452587

TTTTGGATACACTATGATCTCCACATCATA34452566GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392559.1:33036020-33036041

TTTTGGATACACTGTGATCTCCACATCATA33036020GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGTTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:43546502-43546523

TTTTGGATACACTATGATCTCCACATCATA43546502GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:43550808-43550829

TTTTGGATACACTATGATCTCCACATCATA43550808GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:37004729-37004750

TTTTGGATACACTGTGATCTCCACATCATA37004729GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:29740154-29740175

TTTTGGATACACTGTGATCTCCACATCATA29740154GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:43876572-43876593

TTTTGGATACGCTGTGATCTCTATATCATA43876572GTGTAGGGGTTGAATATAGGTCTAATGGATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392563.1:6007169-6007190

TTTTGGATACACTGTGATCTCCATATCATA6007169GTGTAGGGGTTGAATATAGGTCTAATGAATTGGCTAAAGAGTTAGATATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392563.1:38126613-38126634

TTTTGGATACACTGTGATCTCCACATCATA38126613GTGTAGGGGTTGAATATAGGTCTAATGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392563.1:40994213-40994234

TTTTGGATACACTGTGATCTCCACATCATA40994213GTGTAGGGGTTGAATATAGGTCTAAGGAATTGACTAAAGAGTTAGGTATAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:42130966-42130987

TTTTGGATACGATGTGATCTCCATATCATA42130966GTGTAGGGGTTGAATATAGGTCTAATGGATTGCTTAAAGAGTCAGGTATAAA

14-L105672-1033-030-L04-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-030-L04 3', genomic survey sequence.
JY280991.1:737-758

TTTATACCTAACTCTTTAGCCAATTCATTA737GACCTATATTCAACCCCTACACTATGATATGG

61-L106508-1033-026-J12Q-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-026-J12 3', genomic survey sequence.
JY315045.1:413-434

TTTACACCTAACTCTTTAGTCAGTTCATTA413GACCTATATTCAACCCCTACACTATGATGTGAAGATCACAGCGTATCCAAAA

38-L107814-1033-109-L09-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-109-L09 5', genomic survey sequence.
JY331533.1:786-807

TTTATACCTAACTCTTTAGTCAATTCATTA786GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

19-L112383-1033-235-F06-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-235-F06 3', genomic survey sequence.
JY456147.1:619-640

TTTATACCTAACTCTTTAGTCAATTCATTA619GACCTATATTCAACCCCTACACTATGATGTGGAGATCATAGTGTATCCAAAA

24-L113120-1033-272-O06-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-272-O06 3', genomic survey sequence.
JY465110.1:128-149

TTTATACCTAATTCTTTAGTCAATTCATTA128GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

19-L113064-1033-268-E05-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-268-E05 3', genomic survey sequence.
JY470277.1:91-112

TTTATACCTAACTCTTTAGCCAATTCATTA91GACCTATATTCAACCCCTACACTATGATATGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392548.1:28341415-28341436

TTTATACCTAACTCTTTAGTCAATTCATTA28341415GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392548.1:35780176-35780197

TTTATACCTAACTCTTTAGTCAATTCACTA35780176GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:36677612-36677633

TTTATACCTAATTCTTTAGCCAATTCATTA36677612GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:14813329-14813350

TTTATACCTAACTCTTTAGCCAATTCATTA14813329GACCTATATTCAACCCCTACACTATGATATGGAGATCACAGTGTATCCGAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:14818048-14818069

TTTATACCTAACTCTTTAGCCAATTCATTA14818048GACCTATATTCAACCCCTACACTATGATATGGAGATCACAAGGTGTATCCGA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:34118872-34118893

TTTATACCTAACTCTTTAGTCAATTCATTA34118872GACCTATATTCAACCCCTACACTATGATATGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:40276263-40276284

TTTATACATAACTCTTTAGTCAATTCATTA40276263GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:39859306-39859327

TTTATACCTAACTCTTTAGCCAATTCATTA39859306GACCTATATTCAACCCCTACACTATGATGTGGAGATCATAGTGTATCCAAGA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392554.1:24929438-24929459

TTTATACCTAACTCTTTAGTCAATTCATTA24929438GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAAGGTGTATTCAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:39290444-39290465

TTTACACCTAACTCTTTAGTCAGTTCATTA39290444GACCTATATTCAACCCCTACACTATGATGTGAAGATCACAGCGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392557.1:35315644-35315665

TTTATACCTAATTCTTTAGTCAATTCATTA35315644GACCTATATTCAACCCCTACACTATGATATGGAGATCACGTGTATCCGAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392557.1:35320320-35320341

TTTATACCTAATTCTTTAGTCAATTCATTA35320320GACCTATATTCAACCCCTACACTATGATATGGAGATCACAGTGTATCCGAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392559.1:29794898-29794919

TTTATACCTAATTCTTTAGCCAATTCATTA29794898GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:40044359-40044380

TTTATACCTAACTCTTTAGCCAATTCATTA40044359GACCTATATTCAACCCCTACACTATGATGTGGAGATCATAGTGTATCCAAGA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:24911897-24911918

TTTATACCTAACTCTTTAGTCAATTCCTTA24911897GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:27367468-27367489

TTTATACCTAACTCGTTAGTCAATTCATTA27367468GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:28104658-28104679

TTTATACCTAACTCTTTAGTCAATTCATTA28104658GACCTATATTCAACCCCTACACTATGATATGGAGATCATAGTGTATCCAAAA

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392563.1:45926329-45926350

TTTATACTTAACTCTTTAGTCAATTCATTA45926329GACCTATATTCAACCCCTACACTATGATGTGGAGATCACAGTGTATCCAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.374 | 0.365 | search_plus_done; http://172.18.8.135:50400/match?q=GTGTAGGGGTTGAATATAGGTC&k=0&no_gap=0&offset=0&limit=50
0.660 | 0.285 | search_minus_done; http://172.18.8.135:50400/match?q=GACCTATATTCAACCCCTACAC&k=0&no_gap=0&offset=0&limit=18
0.676 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).