GGGenome | Results

2025-04-14 14:26:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
AC172870.1:40530-40549

AATATTAAAATCACTTCGATTTGAAGAACT40530GTGTTTCTGGGATTGTTGGGATCAAATAACATATTTAAAAATAATTTGCA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117O12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189620.3:114167-114186

TGCAAATTATTTTTAAATATGTTATTTGAT114167CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:14600-14619

TGCAAATTATTTTTAAATATGTTATTTGAT14600CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59263797-59263816

AAATATGTGGTTTTTAATATGTTATTTGAT59263797CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT

Brassica napus genome assembly, chromosome: A09.
HG994363.1:43126016-43126035

AAATATGTGGTTTTTAATATGTTATTTGAT43126016CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT

Brassica rapa genome, scaffold: A09.
LR031568.1:47442234-47442253

AAATATGTGGTTTTTAATATGTTATTTGAT47442234CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT

Aegilops longissima genome assembly, chromosome: 2S.
LR881070.1:761719783-761719802

AGCAAACACATTAGCCCCTTAGTTGTTTTA761719783CCCAACAATCCCAGAAACACTCAAGGGGCACTAGATTGCACGTAGAAATT

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:57908849-57908868

AAATATGTGGTTTTTAATATGTTATTTGAT57908849CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.115 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=GTGTTTCTGGGATTGTTGGG&k=0&no_gap=0&offset=0&limit=50
0.174 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CCCAACAATCCCAGAAACAC&k=0&no_gap=0&offset=0&limit=49
0.178 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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