GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:20:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011L09, complete sequence.
AC189224.1:2230-2249
TATCATGAAAGTCACATATTCAAATCTATC2230GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:10481894-10481913
TATCATGAAAGTCACATATTCAAATCTATC10481894GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:9246100-9246119
TATCATGAAAGTCACATATTCAAATCTATC9246100GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:11709440-11709459
TGTCATGAAAGTCACATTTTCAAATCTATC11709440GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTCT
Brassica rapa genome, scaffold: A06.
LR031569.1:9041392-9041411
TATCATGAAAGTCACATATTCAAATCTATC9041392GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:11414699-11414718
TGTCATGAAAGTCACATTTTCAAATCTATC11414699GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTCT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:9878121-9878140
TATCATGAAAGTCACATATTCAAATCTATC9878121GTTAAGTGGTCCGGCTGTATGTCACGTTCGTGTAAAAGTTGGACCTTTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
AC189247.2:6086-6105
AAAAAGGTCCAACTTTTACACGAACGTGAC6086ATACAGCCGGACCACTTAACGATAGATTTGAATATGTGACTTTCATGATA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:47492629-47492648
AGAAAGGTCCAACTTTTACACGAACGTGAC47492629ATACAGCCGGACCACTTAACGATAGATTTGAAAATGTGACTTTCATGACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTAAGTGGTCCGGCTGTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTAAGTGGTCCGGCTGTAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.125 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=GTTAAGTGGTCCGGCTGTAT&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ATACAGCCGGACCACTTAAC&k=0&no_gap=0&offset=0&limit=43
0.158 | 0.001 | cgi_end;

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