GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:25:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK05336.1_1.CasaPuKu mRNA sequence.
JP449485.1:833-852
GGAAGAGCATTTCGCTGCCTTTTGCGATTG833GTTAGCAGAGAAGAAAGCCGAACGCCGTTCCAATACTACTACTAATAGTA
Vibrio fischeri ES114 chromosome I, complete sequence.
CP000020.2:1108090-1108109
ATTACCGAAAAACTTTGCTTTTTGAACAGA1108090GTTAGCAGAGAAGAAAGCCGCATTATCTGAGCCTTTGCGCATGGTGAGAG
Vibrio campbellii strain DS40M4 chromosome 2, complete sequence.
CP030789.1:1851588-1851607
GTTCGCAAACACTTTTGGTTTTTGAACAGA1851588GTTAGCAGAGAAGAAAGCCGCGTTGTCAGAACCTTTACGCATGGTTAAAG
Prochlorococcus sp. MIT 0801, complete genome.
CP007754.1:1667026-1667045
TCTTATCCGCTAACGCTTTCTTCTCTGCTG1667026CGGCTTTCTTCTCTGCTAACGCTTTCTTCTCTGCTAAAGCTTTCTTATCT
Vibrio campbellii strain LJC011 chromosome 2, complete sequence.
CP050479.1:1779100-1779119
CTTTAACCATGCGTAAAGGTTCTGACAACG1779100CGGCTTTCTTCTCTGCTAACTCTGTTCAAAAACCAAAAGTGTTTGCGAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTAGCAGAGAAGAAAGCCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTAGCAGAGAAGAAAGCCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=GTTAGCAGAGAAGAAAGCCG&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=CGGCTTTCTTCTCTGCTAAC&k=0&no_gap=0&offset=0&limit=47
0.165 | 0.001 | cgi_end;

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