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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 03:41:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

coau0003J10 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0003J10 5', mRNA sequence.
AI055293.1:354-372
CCAGGTGTGATGGGCAACCAGCCGGATATA354GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTTGGTGCATTCGAAG
GR__Eb43D04.r GR__Eb Gossypium raimondii cDNA clone GR__Eb43D04 3', mRNA sequence.
CO131082.1:125-143
CCAGGTGTGATGGGCAACCAGCCGGATATA125GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
C04013A05SK FlavFr1 Citrus clementina cDNA clone C04013A05, mRNA sequence.
CX292231.1:229-247
CCAGGTGTGATGGGCAACCAACCTGACATA229GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
USDA-FP/ARO_13114 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-33_B01 5', mRNA sequence.
DN798246.1:243-261
CCAGGTGTGATGGGCAACCAACCTGACATA243GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
USDA-FP/ARO_16076 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-37_C07 5', mRNA sequence.
DN960246.1:243-261
CCAGGTGTGATGGGCAACCAACCTGACATA243GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
EST1069237 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT558597.1:168-186
CCAGGTGTGATGGGCAACCAGCCGGATATA168GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
IC0AAA80AD07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY292483.1:782-800
CCAGGTGTGATGGGCAACCAACCTGACATA782GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
UFL_469_71 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES791046.1:193-211
CCAGGTGTGATGGGCAACCAGCCGGATATA193GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_475_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES801280.1:318-336
CCAGGTGTGATGGGCAACCAGCCGGATATA318GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_224_21 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES810015.1:485-503
CCAGGTGTGATGGGCAACCAGCCGGATATA485GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_331_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES818353.1:591-609
CCAGGTGTGATGGGCAACCAGCCGGATATA591GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_418_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES822620.1:294-312
CCAGGTGTGATGGGCAACCAGCCGGATATA294GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_031_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES837383.1:403-421
CCAGGTGTGATGGGCAACCAGCCGGATATA403GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_047_45 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES838814.1:452-470
CCAGGTGTGATGGGCAACCAGCCGGATATA452GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_055_09 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES839515.1:102-120
CCAGGTGTGATGGGCAACCAGCCGGATATA102GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_134_33 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES846525.1:423-441
CCAGGTGTGATGGGCAACCAGCCGGATATA423GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_135_82 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES846662.1:356-374
CCAGGTGTGATGGGCAACCAGCCGGATATA356GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
UFL_139_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES847042.1:138-156
CCAGGTGTGATGGGCAACCAGCCGGATATA138GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
CS00-C1-100-012-B01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY650536.1:318-336
CCAGGTGTGATGGGCAACCAACCTGACATA318GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C1-101-047-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY662710.1:242-260
CCAGGTGTGATGGGCAACCAACCTGACATA242GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C1-101-050-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY663042.1:233-251
CCAGGTGTGATGGGCAACCAACCTGACATA233GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C1-101-059-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY663837.1:242-260
CCAGGTGTGATGGGCAACCAACCTGACATA242GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C1-650-024-G01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY681682.1:257-275
CCAGGTGTGATGGGCAACCAACCTGACATA257GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C1-650-025-E08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY681760.1:268-286
CCAGGTGTGATGGGCAACCAACCTGACATA268GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C3-700-061-B12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY697523.1:243-261
CCAGGTGTGATGGGCAACCAACCTGACATA243GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C3-701-105-H10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY709074.1:67-85
CCAGGTGTGATGGGCAACCAACCTGACATA67GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCACAGA
CS00-C3-702-071-B02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY716757.1:232-250
CCAGGTGTGATGGGCAACCAACCTGACATA232GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CS00-C3-703-036-A09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY725561.1:425-443
CCAGGTGTGATGGGCAACCAACCTGACATA425GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
CR05-C1-100-075-H06-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY764054.1:486-504
CCAGGTGTGATGGGCAACCAACCTGACATA486GTTATGGACAGCCTTGCTGTTCATGGCTTGGGGTTTGGTGCATCCAAAG
CR05-C1-103-007-C07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY775191.1:583-601
CCAGGTGTGATGGGCAACCAACCTGACATA583GTTATGGACAGCCTTGCTGGTCATGGCTTGGGTTTGGTGCATCCCAAAA
CR05-C3-701-104-B12-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY801580.1:365-383
CCAGGTGTGATGGGCAACCAACCTGACATA365GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
IC0AAA80AD07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80AD07, mRNA sequence.
FC908096.1:782-800
CCAGGTGTGATGGGCAACCAACCTGACATA782GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
C31801G10EF StrCleopN Citrus reshni cDNA clone C31801G10, mRNA sequence.
FC924034.1:594-612
CCAGGTGTGACGGGCAACCAACCTGACATA594GTTATGGACAGCCTTGCTGTTCATGGCTTGNGTTTGGTGCATCCAAAGA
C34209G03EF PostHarveN Citrus clementina cDNA clone C34209G03, mRNA sequence.
FC932543.1:540-558
CCAGGTGTGATGGGCAACCAACCTGACATA540GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
7124_EST002177 7124 root normalized cDNA library Gossypium barbadense cDNA clone 12E-19 5', mRNA sequence.
GR925989.1:70-88
CCAGGTGTGATGGGCAACCAGCCGGATATA70GTTATGGACAGCCTTGCTGTTCATGGTCTTGGTTTGGTGCATCCGAAGA
mhczaa0_013434.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_013434.z1, mRNA sequence.
JG839278.1:125-143
GGGAATTCGGCCATTACGGCCGGGGATATA125GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
C06-G09302039-14-198-6 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone C06-G09302039-14-198-6, mRNA sequence.
JG842304.1:556-574
CCAGGTGTGATGGGCAACCAGCCGGATATG556GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
mhczaa0_015624.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_015624.z1, mRNA sequence.
JG845595.1:332-350
CCAGGTGTGATGGGCAACCAGCCGGATATA332GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
H04-G09301798-11-176-4 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone H04-G09301798-11-176-4, mRNA sequence.
JG853323.1:753-771
CCAGGTGTGATGGGCAACCAGCCGGATATA753GTTATGGACAGCCTTGCTGTTCATGGGCCTTGGTTTGGTGCATCCGAAG
ndcxb0_0012_A01.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ372075.1:239-257
CCAGGTGTGATGGGCAACCAGCCGGATATA239GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
ndcxe0_0031_C03.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ382140.1:239-257
CCAGGTGTGATGGGCAACCAGCCGGATATA239GTTATGGACAGCCTTGCTGTTCATGGTCTTGGTTTGGTGCATCCGAAGA
ndcxf0_0011_A01.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ383350.1:334-352
CCAGGTGTGACGGGCAACCAGCCGGATATA334GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
ndcxg0_0007_B10.ab1 Upland cotton seedling roots at 12h control (ndcxg) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ386078.1:527-545
CCAGGTGTGATGGGCAACCAGCCGGATATA527GTTATGGACAGCCTTGCTGTTCATGGTC
ndcxg0_0029_F02.ab1 Upland cotton seedling roots at 12h control (ndcxg) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ387990.1:546-564
CCAGGTGTGATGGGCAACCAGCCGGATATA546GTTATGGACAGCCTTGCTGTTCATGGT
tigr-gss-dog-17000333861116 Dog Library Canis lupus familiaris genomic, genomic survey sequence.
CE291864.1:104-122
TCGGTGCGCCCAGGGCTTAGCTTGGCCACC104GTTATGGACAGCCTTGCTGGCCGGAGGTGCCCGGTGCCCGGGAGCCTCG
GH_TBb035P15f Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO169912.1:657-675
CCAGGTGTGATGGGCAACCAGCCGGATATA657GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:34127337-34127355
CCAGGTGTGATGGGCAACCAGCCGGATATA34127337GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:63893197-63893215
CCAGGTGTGATGGGCAACCAGCCGGATATA63893197GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:58110258-58110276
CCAGGTGTGATGGGCAACCAGCCGGATATA58110258GTTATGGACAGCCTTGCTGTTCATGGCCTTGGTTTGGTGCATCCGAAGA
Khaya senegalensis isolate HCNGB_00002341 chromosome 9.
CP135558.1:9022731-9022749
CCAGGTGTAATGGGCAACCAACCTGACATA9022731GTTATGGACAGCCTTGCTGTTCATGGCCTGGGTTTGGTTCACCCAAGGA
Swietenia macrophylla isolate HCNGB_00002344 chromosome 26.
CP135577.1:6897152-6897170
CCGGGTGTAATGGGCAATCAACCTGACATA6897152GTTATGGACAGCCTTGCTGTTCATGGCCTGGGTTTGGTTCACCCAAGGA
Theobroma grandiflorum isolate C1074 chromosome 5.
CP142128.1:17167752-17167770
CCTGGTGTGATGGGCAACCAGCCAGACATA17167752GTTATGGACAGCCTTGCTGTTCATGGCCTAGGTTTGGTGCATCCAAAGA
Ballota nigra genome assembly, chromosome: 1.
OX344720.1:797669-797687
CCCGGTGTTCTAGGCAACCAACCCGATATC797669GTTATGGACAGCCTTGCTGTTCATGGCCTTGGCCTAGTACACCCTAAAA
Acer campestre genome assembly, chromosome: 1.
OX940799.1:14737049-14737067
CCAGGTGTGATGGGCAACCAACCTGACATA14737049GTTATGGACAGCCTTGCTGTTCACGGTTTAGGGTTGGTGCATCCGAAGA
Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:6631558-6631576
CCAGGTGTGATGGGCAACCAACCTGACATA6631558GTTATGGACAGCCTTGCTGTTCATGGCTTGGGTTTGGTGCATCCAAAGA
Galeopsis tetrahit genome assembly, chromosome: 2.
OY776120.1:95724875-95724893
CCTGGCGTTCTAGGCAACCAACCTGACATA95724875GTTATGGACAGCCTTGCTGTTCATGGCCTAGGCTTGGTACACCCTAAGA
Pterostichus madidus genome assembly, chromosome: 1.
OU452301.1:17284737-17284755
TCCAATGCAAACCAATACTCATTATCCGAC17284737GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Pterostichus madidus genome assembly, chromosome: 4.
OU452304.1:17017239-17017257
TCCAATGCAAACCAATACTCATTATCCGAC17017239GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Pterostichus madidus genome assembly, chromosome: 14.
OU452315.1:12919352-12919370
TCCAACGCAAACCAATACTCATTATCCGAC12919352GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Pterostichus madidus genome assembly, chromosome: 14.
OU452315.1:29229353-29229371
TCCAATGCAAACCAATACTCATTATCCGAC29229353GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Pterostichus madidus genome assembly, chromosome: 15.
OU452316.1:12470468-12470486
TCCAATGCAAACCAATACTCATTATCCGAC12470468GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Pterostichus madidus genome assembly, chromosome: 16.
OU452317.1:20151447-20151465
TCCAATGCAAACCAATACTCATTATCCGAC20151447GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Pterostichus madidus genome assembly, chromosome: 16.
OU452317.1:23021552-23021570
TCCAATGCAAACCAATACTCATTATCCGAC23021552GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGATGCA
Pterostichus madidus genome assembly, chromosome: 18.
OU452319.1:7040725-7040743
TCCAATGCAAACCAATACTCATTATCCGAC7040725GTTATGGACAGCCTTGCTGAACTTAAACGGTCGGTTGAATTTTGTTGCA
Agrotis exclamationis genome assembly, chromosome: 10.
OX465426.1:4854940-4854958
GATTAGTCGGAGAAAGCTACAAATAGGAAG4854940GTTATGGACAGCCTTGCTGCAGACGCGGTGCAAGATGTGATATAAGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTATGGACAGCCTTGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTATGGACAGCCTTGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.675 | 2.666 | search_plus_done; http://172.18.8.135:50400/match?q=GTTATGGACAGCCTTGCTG&k=0&no_gap=0&offset=0&limit=50
2.738 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCAAGGCTGTCCATAAC&k=0&no_gap=0&offset=0&limit=0
2.738 | 0.000 | cgi_end;

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