GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 00:38:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

4_Tbi_b3v08.
OD567495.1:41756-41775
TTAGAGAGTACCACAGGCCTCGCGATAATT41756GTTCAGCGCTGTCGACATTAATTACTATACACAACACAATACCCTCCTAA
Dianthus caryophyllus mRNA, clone: CES05P17, 5' end sequence.
FY384357.1:340-359
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT340TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CES07C05, 5' end sequence.
FY384794.1:325-344
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT325TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CES13P22, 5' end sequence.
FY387391.1:174-193
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT174TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CES17M15, 5' end sequence.
FY388824.1:325-344
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT325TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CES23C07, 5' end sequence.
FY390836.1:328-347
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT328TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CES24H22, 5' end sequence.
FY391346.1:325-344
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT325TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CES27_F20, 5' end sequence.
FY392416.1:338-357
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT338TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CFES14_G09, 5' end sequence.
FY399232.1:354-373
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT354TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
Dianthus caryophyllus mRNA, clone: CFES21M06, 5' end sequence.
FY401980.1:333-352
CCTTAAGCTTTTCGTCGGTAACCTTCCCTT333TAATGTCGACAGCGCTGAACTTGCTGGCTTGTTTGGTAATGCTGGTACTG
4_Tte_b3v08.
OE006584.1:21389-21408
TTAGGAGGGTATTGTGTTGTGTATAGTAAT21389TAATGTCGACAGCGCTGAACAATTATCGCGAGGCCTGTGGACTCTCTAAT
5_Tge_b3v08.
OE841275.1:114898-114917
TTAGGAGGGTATTGTGTTGTGTATAGTAAT114898TAATGTCGACAGCGCTGAACAATTATCGCGAGGCCTGCGGACTCTCTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTCAGCGCTGTCGACATTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCAGCGCTGTCGACATTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCAGCGCTGTCGACATTA&k=0&no_gap=0&offset=0&limit=50
0.786 | 0.682 | search_minus_done; http://172.18.8.135:50400/match?q=TAATGTCGACAGCGCTGAAC&k=0&no_gap=0&offset=0&limit=49
0.794 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).