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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 21:16:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

39-E024299-021-023-M09-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022M0923Q, mRNA sequence.
CX192670.1:94-113
ACGGAAAGGGAGGTAAACATGGAAGTGAAG94GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
Brassica oleracea var. viridis mRNA, clone: KALE-031J18, 5' end sequence.
DK467629.1:705-724
ACGGAAAGGGAGGTAAACATGGAAGTGAAG705GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGAAGCGGAGGTT
0078804 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV154943.1:702-721
ACGGAAAGGGAGGTAAACATGGAAGTGAAG702GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAG
0081298 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV157436.1:576-595
ACGGAAAGGGAGGTAAACATGGAAGTGAAG576GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
0082487 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV158625.1:696-715
ACGGAAAGGGAGGTAAACATGGAAGTGAAG696GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
0082867 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV159005.1:682-701
ACGGAAAGGGAGGTAAACATGGAAGTGAAG682GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
0083797 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV159935.1:694-713
ACGGAAAGGGAGGTAAACATGGAAGTGAAG694GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
0084289 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160427.1:703-722
ACGGAAAGGGAGGTAAACATGGAAGTGAAG703GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
0168288 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV165392.1:311-330
ACGGAAAGGGAGGTAAACATGGAAGTGAAG311GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
BOGWU17TR BOGW Brassica oleracea genomic clone BOGWU17, genomic survey sequence.
BH528028.1:488-507
ACGGAAAGGGAGGTAAACATGGAAGTGAAG488GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
Brassica oleracea transcription factor-like protein (T2I1_290) gene, partial cds; putative oleosin (GRP1), putative oleosin (GRP2), putative oleosin (GRP3), putative oleosin (GRP4), and putative oleos
AY028608.1:10282-10301
ACGGAAAGGGAGGTAAACATGGAAGTGAAG10282GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:2890438-2890457
ACGGAAAGGGAGGTAAACATGGAAGTGAAG2890438GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
Brassica napus clone STA 41-2 mRNA, complete cds.
L33282.1:750-769
ACGGAAAGGGAGGTAAACATGGAAGTGAAG750GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
Lathyrus sativus genome assembly, chromosome: 5.
OZ012739.1:611918452-611918471
AGAGGACGGTCTGTTGGTGCATGGTGGTCG611918452GTTCGTCAATGGATGAAGGTTCCTCAAAGATTTTTCGAACAGATTCGAGT
B.oleracea mRNA for pollen coat oleosin, clone bopc3.
X96407.1:678-697
ACGGAAAGGGAGGTAAACATGGAAGTGAAG678GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
B.oleracea mRNA for pollen coat oleosin, clone bopc5.
X96408.1:655-674
ACGGAAAGGGAGGTAAACATGGAAGTGAAG655GTTCGTCAATGGATGAAGGTAAACACGGAAGCGGAGGTAAACATGAAAGT
B.oleracea mRNA for pollen coat oleosin, clone bopc4.
X96409.1:716-735
ACGGAAAGGGAGGTAAACATGGAAGTGAAG716GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
B.oleracea mRNA for pollen coat oleosin, clone gbopc4.
X96410.1:1701-1720
ACGGAAAGGGAGGTAAACATGGAAGTGAAG1701GTTCGTCAATGGATGAAGGTAAACACGGAGGTAAGCATGGAAGCGGAGGT
Melanostoma scalare genome assembly, chromosome: 2.
OX456985.1:10077236-10077255
TCTTTCCCACATCTTTTATTTCCTTTTATA10077236GTTCGTCAATGGATGAAGGTCCATAATTATATAATGAGGTAGAAAGAGTT
0078640 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV154779.1:702-721
ACCTCCGCTTCCATGCTTACCTCCGTGTTT702ACCTTCATCCATTGACGAACCTTCACTTCCATGTTTACC
0078722 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV154861.1:700-719
ACCTCCGCTTCCATGCTTACCTCCGTGTTT700ACCTTCATCCATTGACGAACCTTCACTTCCATGTTTACCTCC
Brassica oleracea clone BAC Bo37N21, partial sequence.
AY350710.1:39291-39310
ACCTCCGCTTCCATGCTTACCTCCGTGTTT39291ACCTTCATCCATTGACGAACCTTCACTTCCATGTTTACCTCCCTTTCCGT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:62589275-62589294
ACCTCCGCTTCCATGCTTACCTCCGTGTTT62589275ACCTTCATCCATTGACGAACCTTCACTTCCATGTTTACCTCCCTTTCCGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60526559-60526578
ACCTCCGCTTCCATGCTTACCTCCGTGTTT60526559ACCTTCATCCATTGACGAACCTTCACTTCCATGTTTACCTCCCTTTCCGT
Lathyrus sativus genome assembly, chromosome: 6.
OZ012740.1:318749712-318749731
AACTCGGATCCGTTCGAAAATCTTTGAGTA318749712ACCTTCATCCATTGACGAACCGACCACCATGCACCAACAAACCGTCCGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTCGTCAATGGATGAAGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCGTCAATGGATGAAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.585 | 0.576 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCGTCAATGGATGAAGGT&k=0&no_gap=0&offset=0&limit=50
0.759 | 0.174 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTCATCCATTGACGAAC&k=0&no_gap=0&offset=0&limit=31
0.763 | 0.004 | cgi_end;

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