GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 19:33:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene82489_B1 mRNA sequence.
JV350701.1:84-103
CCCCAAGAAACCCTTCGATCCCCACAGAGG84GTTGACCCCAATTGTCCATCAGATCGTCTCCAACCCTATCTTGCGCCGAT
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:12211035-12211054
CCCCAAGAAACCCTTCGATCCCCACAGAGG12211035GTTGACCCCAATTGTCCATCGGATCGTCTCCAACCCTATCTCGCGCCGAT
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:12173702-12173721
CCCCAAGAAACCCTTCGATCCCCACAGAGG12173702GTTGACCCCAATTGTCCATCGGATCGTCTCCAACCCTATCTCGCGCCGAT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:12106782-12106801
CCCCAAGAAACCCTTCGATCCCCACAGAGG12106782GTTGACCCCAATTGTCCATCGGATCGTCTCCAACCCTATCTCGCGCCGAT
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:13149146-13149165
CGCCCCAAGAAACCCTTCGATCCCCACGGG13149146GTTGACCCCAATTGTCCATCAGATCGTCTCCAACCCTATCTCGCGCCGAT
TSA: Musa acuminata AAA Group Unigene89997_NK1 mRNA sequence.
JV450919.1:404-423
ATCGGCGCAAGATAGGGTTGGAGACGATCT404GATGGACAATTGGGGTCAACCCTCTGTGGGGATCGAAGGGTTTCTTGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTGACCCCAATTGTCCATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGACCCCAATTGTCCATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGACCCCAATTGTCCATC&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=GATGGACAATTGGGGTCAAC&k=0&no_gap=0&offset=0&limit=45
0.150 | 0.001 | cgi_end;

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