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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 13:23:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR2BF14JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV543060.1:738-757
TTAAGTTCATCTCGAAATCTCCAACCTTAA738GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTCGTGAACCAGTGCC
RR4BS70JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX774698.1:767-786
TTAAGTTCATCTCGAAATCTCCAACCTTAA767GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTCGTGAACCAGTG
RR3D903JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY909821.1:771-790
TCAAGTTCATCTCGAAATCTCCAACCTTAA771GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTCGTGAACCAGTGCC
RR3DZ52JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911653.1:766-785
TTAAGTTCATCTCGAAATCTCCAACCTTGA766GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTAGTGACCAGTGCCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3571.
FX663325.1:804-823
TCAAGTTCATCTCGAAATCTCCAACCTTAA804GTTTGAGCACAGCAACCTCAGTCTCATCACACATTTCGTGAACCAGTGCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6096.
FX706210.1:784-803
TAAGGTTCATCTCAAAATCTCCAACCTTGA784GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTCGTGAACCAGTGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17567.
FX792120.1:784-803
TTAAGTTCATCTCGAAATCTCCAACCTTAA784GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTCGTGAACCAGTGCC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:13824015-13824034
AGTGCCGTGAGAGGAGGAGACTTGCCTTAA13824015GTTTGAGCACAGCAACCTCAGTCTCATCACACATCTCGTGAACCAGTGCC
RR2BF14TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539216.1:335-354
GGCACTGGTTCACGAGATGTGTGATGAGAC335TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR3A389TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV547878.1:322-341
GGCACTGGTTCACGAGATGTGTGATGAGAC322TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTCGAGATGAACTTAA
RS3AE15TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW732396.1:174-193
GGCACTGGTTCACGAGATGTGTGATGAGAC174TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTGA
BR073859 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-031E03 5', mRNA sequence.
EX087569.1:383-402
GGCACTGGTTCACGAGATGTGTGATGAGAC383TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTTGAGATGAACCTTA
BR075242 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-055E01 5', mRNA sequence.
EX088952.1:384-403
GGCACTGGTTCACGAGATGTGTGATGAGAC384TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTTGAGATGAACCTTA
BR080514 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-147A11 5', mRNA sequence.
EX094224.1:317-336
GGCACTGGTTCACGAGATGTGTGATGAGAC317TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTTGAGATGAACCTTA
RR1CR62TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749838.1:359-378
GGCACTGGTTCACGAGATGTGTGATGAGAC359TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR1CV67TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX750187.1:356-375
GGCACTGGTTCACGAGATGTGTGATGAGAC356TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR4BS70TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770519.1:367-386
GGCACTGGTTCACGAGATGTGTGATGAGAC367TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR4BV52TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770762.1:388-407
GGCACTGGTTCACGAGATGTGTGATGAGAC388TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR3D903TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY913615.1:355-374
GGCACTGGTTCACGAGATGTGTGATGAGAC355TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTGA
RR3DZ52TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915889.1:366-385
GGCACTGGTTCACTAGATGTGTGATGAGAC366TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTCGAGATGAACTTAA
RR4DK84TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922910.1:317-336
GGCACTGGTTCACGAGATGTGTGATGAGAC317TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR2EN01TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540574.1:389-408
GGCACTGGTTCACGAGATGTGTGATGAGAC389TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTCGAGATGAACTTAA
RR2EN23TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540593.1:492-511
GGCACTGGTTCACGAGATGTGTGATGAGAC492TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTCGAGATGAACTTAA
RR2EO08TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540658.1:365-384
GGCACTGGTTCACGAGATGTGTGATGAGAC365TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR3F223TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD549978.1:390-409
GGCACTGGTTCACGAGATGTGTGATGAGAC390TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTCGAGATGAACTTAA
RR4FQ48TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD560017.1:367-386
GGCACTGGTTCACGAGATGTGTGATGATAC367TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RS1GN63TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940283.1:300-319
GGCACTGGTTCACGAGATGTGTGATGAGAC300TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTGA
RS1GP38TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940429.1:410-429
GGCACTGGTTCACGAGATGTGTGATGAGAC410TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR4G489JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD983080.1:115-134
GGCACTGGTTCACGAGATGTGTGATGAGAC115TGAGGTTGCTGTGCTCAAACTTAAGGCAAGTCTCCTCTCACGCCATTAGA
RR4FX82TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD986294.1:367-386
GGCACTGGTTCACGAGATGTGTGATGATAC367TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
RR4GX04TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD989233.1:352-371
GGCACTGGTTCACGAGATGTGTGATGAGAC352TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
Raphanus sativus mRNA, clone: RSCF01I03, 5' end sequence.
FY428188.1:265-284
GGCACTGGTTCACGAGATGTGTGATGAGAC265TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
Raphanus sativus mRNA, clone: RSCL19L12, 5' end sequence.
FY439463.1:353-372
GGCACTGGTTCACGAGATGTGTGATGAGAC353TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
Raphanus sativus mRNA, clone: RSCR12C07, 5' end sequence.
FY443437.1:138-157
GGCACTGGTTCACGAGATGTGTGATGAGAC138TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
Raphanus sativus mRNA, clone: RSCS05G03, 5' end sequence.
FY447691.1:285-304
GGCACTGGTTCACGAGATGTGTGATGAGAC285TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
0278751 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO951786.1:236-255
GGCACTGGTTCACGAGATGTGTGATGAGAC236TGAGGTTGCTGTGCTCAAACTCAAGGTTGGAGATTTTGAGATGAACCTTA
RS229 salt stress treated wild radish leaf library Raphanus sativus var. niger cDNA 5' similar to biotin/lipoyl attachment domain-containing protein, mRNA sequence.
HS107039.1:316-335
GGCACTGGTTCACGAGATGTGTGATGAGAC316TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
TSA: Raphanus sativus RS15733 mRNA sequence.
JT800280.1:336-355
GGCACTGGTTCACGAGATGTGTGATGAGAC336TGAGGTTGCTGTGCTCAAACTTAAGGTTGGAGATTTCGAGATGAACTTAA
odg01f02.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH971892.1:661-680
TGAGAATAAAACTAGGTCATAAACGGTTTG661TGAGGTTGCTGTGCTCAAACGCGCAGATGTTATGGAGGGNNNNNNNNNNN
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:30208935-30208954
GGCACTGGTTCACGAGATGTGTGATGAGAC30208935TGAGGTTGCTGTGCTCAAACTTAAGGCAAGTCTCCTCCTCTCACGGCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTTGAGCACAGCAACCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTGAGCACAGCAACCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.341 | 0.332 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGAGCACAGCAACCTCA&k=0&no_gap=0&offset=0&limit=50
2.596 | 2.255 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGGTTGCTGTGCTCAAAC&k=0&no_gap=0&offset=0&limit=42
2.616 | 0.021 | cgi_end;

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