GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:08:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES08D03, 5' end sequence.
FY385198.1:199-218
AAGATTAGCAAGATGGATAGAGCTTCGATA199CTTGGGGACGCTATCGATTATTTGAAGGAGCTCTTGCAGAGAATCAGCGA
Dianthus caryophyllus mRNA, clone: CFES03N01, 5' end sequence.
FY395236.1:809-828
AAGATTAGCAAGATGGATAGAGCTTCGATA809CTTGGGGACGCTATCGATTATTTGAAGGAGCTCTTGCAGAGAATCAGCGA
Dianthus caryophyllus mRNA, clone: CFES15_P15, 5' end sequence.
FY399830.1:790-809
AAGATTAGCAAGATGGATAGAGCTTCGATA790CTTGGGGACGCTATCGATTATTTGAAGGAGCTCTTGCAGAGAATCAGCGA
Dianthus caryophyllus mRNA, clone: CFES17_M14, 5' end sequence.
FY400513.1:787-806
AAGATTAGCAAGATGGATAGAGCTTCGATA787CTTGGGGACGCTATCGATTATTTGAAGGAGCTCTTG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.640.C1.
FX297842.1:198-217
AAGATTAGCAAGATGGATAGAGCTTCGATA198CTTGGGGACGCTATCGATTATTTGAAGGAGCTCTTGCAGAGAATCAGCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATCGATAGCGTCCCCAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATCGATAGCGTCCCCAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=TAATCGATAGCGTCCCCAAG&k=0&no_gap=0&offset=0&limit=50
0.416 | 0.316 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGGGGACGCTATCGATTA&k=0&no_gap=0&offset=0&limit=50
0.419 | 0.003 | cgi_end;

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