GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 05:35:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH085D17R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH085D17, genomic survey sequence.
DU990113.1:126-147
ACAACAAGATATATATATATATATAGAGTT126TAATTTCGCGTTTCCTCCGACTGAAAATGCCATGATATACCAATTTGAACTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021E01, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC232461.1:26990-27011
AAGTTCAAATTGGTATATCATAGCATTCTC26990AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATATATATATATAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
AC189319.1:99799-99820
AAGTTCAAATTGGTATATCATAGCATTCTC99799AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATATATATATATAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:61756571-61756592
AAGTTCAAATTGGTATATCATAGCATTCTC61756571AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATATATATATATAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:45577641-45577662
AAGTTCAAATTGGTATATCATAGCATTCTC45577641AGTCGGAGGAAACGCGAAATTAAACTCTATCTATCTATATATATATATTGTT
Brassica rapa genome, scaffold: A09.
LR031568.1:49896238-49896259
AAGTTCAAATTGGTATATCATGGCATTTTC49896238AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATCTTGTTGTCAAC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:60368257-60368278
AAGTTCAAATTGGTATATCATGGCATTTTC60368257AGTCGGAGGAAACGCGAAATTAAACTCTATATATATATATCTTGTTGTCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATTTCGCGTTTCCTCCGACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATTTCGCGTTTCCTCCGACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.123 | 0.114 | search_plus_done; http://172.18.8.135:50400/match?q=TAATTTCGCGTTTCCTCCGACT&k=0&no_gap=0&offset=0&limit=50
0.151 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=AGTCGGAGGAAACGCGAAATTA&k=0&no_gap=0&offset=0&limit=49
0.156 | 0.004 | cgi_end;

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