GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:36:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Blennius ocellaris genome assembly, chromosome: 10.
OY730210.1:9729246-9729265
GTAGAACCAGGTTCATCCTGTTGAGTGACG9729246TACACTCTAATGGCGTCCATTCAAAGGCTCGGAGGAGGTACAAAAAGGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH008A19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189562.1:119400-119419
ACACATGCAAAACCAAAATTTCCAGAAGAT119400TACACTCTAATGGCGTCCATGAAACGCATCCTTCATCTTCTCTGTCGCTA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 99 unordered pieces.
FJ789646.1:914569-914588
ACACATGCAAAACCAAAATTTCCAGAAGAT914569TACACTCTAATGGCGTCCATGAAACGCATCCTTCATCTTCTCTGTCGNNN
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:7814194-7814213
ACACATGCAAAACCAAAATTTCCAGAAGAT7814194TACACTCTAATGGCGTCCATGAAACGCATCCTTCATCTTCTCTGTCGCTA
Lumbricus rubellus genome assembly, chromosome: 16.
OX243826.1:16657766-16657785
AGGTAAGGAGCGTCCTGGCATTTATTTTTA16657766TACACTCTAATGGCGTCCATGCACTACTTTTTCTACACTTTGAGCACTGA
Brassica rapa subsp. pekinensis clone KBrH079N15, WORKING DRAFT SEQUENCE.
FJ789642.1:156618-156637
TAGCGACAGAGAAGATGAAGGATGCGTTTC156618ATGGACGCCATTAGAGTGTAATCTTCTGGAAATTTTGGTTTTGCATGTGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
AC189575.2:5862-5881
TAGCGACAGAGAAGATGAAGGATGCGTTTC5862ATGGACGCCATTAGAGTGTAATCTTCTGGAAATTTTGGTTTTGCATGTGT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:43042598-43042617
TAGCGACGGAGAAGAGGAACGATGAGTTTC43042598ATGGACGCCATTAGAGTGTAATCTTCTGGAAATTTTGGTTTTGCATGTGT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:21739349-21739368
TAGCGACAGAGAAGATGAAGGATGCGTTTC21739349ATGGACGCCATTAGAGTGTAATCTTATGGAAATTTTGGTTTTGCATGTGT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:37009009-37009028
TAGCGACGGAGAAGAGGAACGATGAGTTTC37009009ATGGACGCCATTAGAGTGTAATCTTCTGGAAATTTTGGTTTTGCATGTGT
Brassica rapa genome, scaffold: A07.
LR031574.1:20705953-20705972
TAGCGACAGAGAAGAGGAACGATGAGTTTC20705953ATGGACGCCATTAGAGTGTAATCTTATGGAAATTTTGGTATTGCATGTGT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:33378100-33378119
TAGCGACGGAGAAGAGGAACGATGAGTTTC33378100ATGGACGCCATTAGAGTGTAATCTTCTGGAAATTTCGGTTTTGCATGTGT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:20997183-20997202
TAGCGACAGAGAAGAGGAACGATGAGTTTC20997183ATGGACGCCATTAGAGTGTAATCTTATGGAAATTTTGGTATTGCATGTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TACACTCTAATGGCGTCCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TACACTCTAATGGCGTCCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=TACACTCTAATGGCGTCCAT&k=0&no_gap=0&offset=0&limit=50
0.151 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGACGCCATTAGAGTGTA&k=0&no_gap=0&offset=0&limit=45
0.157 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).