GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:58:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus carolinensis genome assembly, chromosome: 14.
LR738604.1:6700114-6700133
GATTGAACCAGAAACACTTTACCACTGAGT6700114TACATTCCCACTATTTTGAGACAGAGCCTCACGAAGTTGCTTAGGGCCTT
WS04713.CR_O20 SS-BD-32 Picea sitchensis cDNA clone WS04713_O20 3', mRNA sequence.
GT123243.1:467-486
TGCAAACCATCTTGTTACATTGATGAGCAT467TACATTCCCACTATTTTGAGCATGCAATTTGGATCTTTAATTTCTAATAG
Picea glauca clone GQ03312_H03 mRNA sequence.
BT112238.1:1006-1025
TGCAAACCGTCTTGTTACATTGATGAGCAT1006TACATTCCCACTATTTTGAGCATGCAATTTGGATCTTTAATTTCTAATAG
Picea sitchensis clone WS04713_O20 unknown mRNA.
BT123497.1:936-955
TGCAAACCATCTTGTTACATTGATGAGCAT936TACATTCCCACTATTTTGAGCATGCAATTTGGATCTTTAATTTCTAATAG
Sciurus vulgaris genome assembly, chromosome: 15.
LR738626.1:84135772-84135791
AAGGCTCTAAGCAACTTAGTGAGGCTCTGT84135772CTCAAAATAGTGGGAATGTAACTCAGTGGTAAAGTGTTTCTGGTTCAGTC
GQ03312.SP6_H03 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03312_H03 3', mRNA sequence.
EX388309.1:286-305
CTATTAGAAATTAAAGATCCAAATTGCATG286CTCAAAATAGTGGGAATGTAATGCTCATCAATGTAACAAGACGGTTTGCA
Cronobacter sakazakii strain MOD1-GK1025B chromosome, complete genome.
CP078106.1:592193-592212
ATGATCTTACTCTAGACCAATTTCAGGACT592193CTCAAAATAGTGGGAATGTATTTAGTCCCATGTATTCTAAGCAAAAACAT
Cronobacter sakazakii strain GZfs chromosome, complete genome.
CP123201.1:946873-946892
ATGATCTTACTCTAGACCAATTTCAGGACT946873CTCAAAATAGTGGGAATGTATTTAGTCCCATGTATTCTAAGCAAAAACAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TACATTCCCACTATTTTGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TACATTCCCACTATTTTGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.168 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=TACATTCCCACTATTTTGAG&k=0&no_gap=0&offset=0&limit=50
0.237 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAAAATAGTGGGAATGTA&k=0&no_gap=0&offset=0&limit=46
0.240 | 0.003 | cgi_end;

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