GGGenome | Results

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2025-04-10 20:46:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 217 from patent US 8324454.
GZ610071.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 9637756.
KH735596.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 5116 from patent US 9777287.
MI101198.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 10233460.
MM788102.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 5116 from patent US 10428344.
MO395093.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 10428346.
MO395778.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 10696978.
MV355989.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 5116 from patent US 10815494.
MV830435.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 10968461.
MX530010.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 5116 from patent US 11396659.
OO400196.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 11421244.
OO468612.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 11421245.
OO468800.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 11466284.
OO756393.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 5116 from patent US 11624075.
OS891205.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 11655479.
OT003538.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 11814636.
OT841590.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

Sequence 217 from patent US 11840699.
OT937164.1:456-475

GATGCACCAGGCCACTTTCATGACAAGTAT456TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTACATGG

E1280 [C1952|cld21_c08] Cold Library Eutrema salsugineum cDNA, mRNA sequence.
DN773626.1:338-357

GATGCTCCGGGCCACTTCATTGACGAGTAT338TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAACCCTTAACGG

E1550 [C2222|cld24_b02] Cold Library Eutrema salsugineum cDNA, mRNA sequence.
DN773795.1:351-370

GATGCTCCGGGCCACTTCATTGACGAGTAT351TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAACCCTTAACGG

E3770 [C5346|drt7_f06] Drought Library Eutrema salsugineum cDNA, mRNA sequence.
DN776281.1:351-370

GATGCTCCGGGCCACTTCATTGACGAGTAT351TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAACCCTTAACGG

A08_XQ-2 Thellungiella halophila pGAD-GH cDNA library Eutrema halophilum cDNA, mRNA sequence.
EC598998.1:376-395

GATGCTCCGGGCCACTTCATTGACGAGTAT376TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAACCCTTAACGG

MLN1_463 Brassica rapa mature lateral nectary, non-normalized (MLN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR717632.1:454-473

GATGCACCAGGCCACTTTCATGACAAGTAC454TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MLN1_748 Brassica rapa mature lateral nectary, non-normalized (MLN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR717916.1:457-476

GATGCACCAGGCCACTTTCATGACAAGTAC457TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MLN1_924 Brassica rapa mature lateral nectary, non-normalized (MLN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR718092.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAC460TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MLN1_1562 Brassica rapa mature lateral nectary, non-normalized (MLN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR718728.1:445-464

GATGCACCAGGCCACTTTCATGACAAGTAC445TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MLN1_2180 Brassica rapa mature lateral nectary, non-normalized (MLN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR719344.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAC460TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MLN2_54 Brassica rapa mature lateral nectary, normalized (MLN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR720031.1:432-451

GACGCACCAGGCCACTTTCATGACAAGTAT432TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGACCTANACGG

MLN2_484 Brassica rapa mature lateral nectary, normalized (MLN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR720461.1:294-313

GATGCACCAGGCCACTTTCATGACAAGTAT294TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTAAACGG

MLN2_1520 Brassica rapa mature lateral nectary, normalized (MLN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR721498.1:294-313

GATGCACCAGGCCACTTTCATGACAAGTAT294TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN1_675 Brassica rapa mature median nectary, non-normalized (MMN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR723234.1:423-442

GATGCACCAGGCCACTTTCATGACAAGTAC423TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN1_1222 Brassica rapa mature median nectary, non-normalized (MMN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR723781.1:358-377

GATGCACCAGGCCACTTTCATGACAAGTAC358TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN1_1435 Brassica rapa mature median nectary, non-normalized (MMN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR723994.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAC460TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN1_1917 Brassica rapa mature median nectary, non-normalized (MMN1) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR724476.1:454-473

GATGCACCAGGCCACTTTCATGACAAGTAC454TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_154 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR725539.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTC

MMN2_789 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR726173.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_1548 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR726931.1:455-474

GATGCACCAGGCCACTTTCATGACAAGTAT455TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTANACGG

MMN2_1567 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR726950.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_1836 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727219.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGC

MMN2_1892 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727275.1:409-428

GATGCACCAGGCCACTTTCATGACAAGTAC409TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_1990 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727373.1:430-449

GATGCACCAGGCCACTTTCATGACAAGTAC430TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTANACGG

MMN2_2144 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727527.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAC460TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_2224 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727607.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGCTTGANCTCCAAGTCCTAAACGG

MMN2_2368 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727751.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTANACGG

MMN2_2613 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR727996.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_2675 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR728058.1:457-476

GATGCACCAGGCCACTTTCATGACAAGTAT457TACGACGCTGGTTTCGATTCGGATTCGCTCGACCTCCAAGTCCTAAACGG

MMN2_2682 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR728065.1:460-479

GATGCACCAGGCCACTTTCATGACAAGTAT460TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

MMN2_2820 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cyclase family protein, mRNA sequence.
GR728203.1:431-450

GATGCACCAGGCCACTTTCATGACAAGTAT431TACGACGCTGGTTTCGATTCGGATTCGCTTGACCTCCAAGTCCTANACGG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_36698.
FX719292.1:229-248

GATGCACCAGGCCACTTTCATGACAAGTAC229TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTAAACGG

BOT01-8P10TF BOT01 Brassica oleracea genomic clone BOT01-8P10, genomic survey sequence.
FI694658.1:237-256

GATGCACCAGGCCACTTTCATGACAAGTAT237TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAATCCTAAACGG

Thlaspi arvense genome assembly, chromosome: 7.
OU466863.1:2375860-2375879

GATGCTCCAGGCCACTTCATTGACAAGTAT2375860TACGACGCTGGTTTCGATTCCGATTCGCTTGACCTCCAAGTCCTCAACGG

Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:2531224-2531243

GATGCACCAGGTCACTTCTGGGACAATTAT2531224TACGACGCTGGTTTCGATTCCGATTCACTTGACCTCCGAGTCCTTAATGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
4.701 | 4.693 | search_plus_done; http://172.18.8.135:50400/match?q=TACGACGCTGGTTTCGATTC&k=0&no_gap=0&offset=0&limit=50
4.764 | 0.062 | search_minus_done; http://172.18.8.135:50400/match?q=GAATCGAAACCAGCGTCGTA&k=0&no_gap=0&offset=0&limit=0
4.764 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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