GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 23:48:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB028G12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028G12, genomic survey sequence.
DX031551.1:727-746
ATAACAAGAATTAGTATTAGTCTTAACTCT727TACTAGCTCTGTCAATGCCAGATTACATAAGTTACCCAAGGAAAAAAATG
KBrB067H16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB067H16, genomic survey sequence.
DX061055.1:736-755
ATAACAAGAATTAGTATTAGTCTTAACTCT736TACTAGCTCTGTCAATGCCAGATTACATAAGTTACCCAAGGAAAAAAATG
Protoeuglena noctilucae genome assembly, chromosome: 17.
OY253684.1:479276-479295
CCCCCCCCCCCCTGCGTCCTCTCATCGTGT479276TACTAGCTCTGTCAATGCCACGCCATATATCCCCATCTCTCTCATCTCTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:139902-139921
CATTTTTTTCCTTGGGTAACTTATGTAATC139902TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:140492-140511
CATTTTTTTCCTTGGGTAACTTATGTAATC140492TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:141124-141143
CATTTTTTTCCTTGGGTAACTTATGTAATC141124TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:20333697-20333716
TCCTTTTTTCCTTGGGTAACTTATGTAATC20333697TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa genome, scaffold: A03.
LR031572.1:20091089-20091108
TCCTTTTTTCCTTGGGTAACTTATGTAATC20091089TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:20217773-20217792
TCCTTTTTTCCTTGGGTAACTTATGTAATC20217773TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TACTAGCTCTGTCAATGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TACTAGCTCTGTCAATGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=TACTAGCTCTGTCAATGCCA&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCATTGACAGAGCTAGTA&k=0&no_gap=0&offset=0&limit=47
0.156 | 0.004 | cgi_end;

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