GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 18:06:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES09G02, 5' end sequence.
FY385647.1:123-142
GTGGAGCAACTCTAGTAAGGGCATTTACCC123TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
Dianthus caryophyllus mRNA, clone: CES15D03, 5' end sequence.
FY387846.1:160-179
GTGGAGCAACTCTAGTAAGGGCATTTACCC160TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.763.C1.
FX298108.1:157-176
GTGGAGCAACTCTAGTAAGGGCATTTACCC157TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.763.C2.
FX298109.1:243-262
GTGGAGCAACTCTAGTAAGGGCATTTACCC243TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
Sardina pilchardus genome assembly, chromosome: 2.
OY974087.1:39300469-39300488
CCTCTACTACCCCCATTACTACTCACCGAC39300469CCTCAACCAACCCTCCACTACCCCCATATTACCCACCCCTCTACTACCAC
Sardina pilchardus genome assembly, chromosome: 2.
OY974087.1:39300624-39300643
CTTATACCCACCCCTCTACTACCCACCGAC39300624CCTCAACCAACCCTCCACTACCCCCATATTACCCACCCCTCTACTACCAC
Mimachlamys varia genome assembly, chromosome: 18.
OX392544.1:40374084-40374103
AACATTACTTTGACCTAATATAGAATGTTG40374084CCTCAACCAACCCTCCACTACTAGCACTGGGCCCCGCTGGTTAAGGTGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAGTGGAGGGTTGGTTGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGTGGAGGGTTGGTTGAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.296 | 0.287 | search_plus_done; http://172.18.8.135:50400/match?q=TAGTGGAGGGTTGGTTGAGG&k=0&no_gap=0&offset=0&limit=50
0.322 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCAACCAACCCTCCACTA&k=0&no_gap=0&offset=0&limit=46
0.324 | 0.002 | cgi_end;

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