GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 23:52:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Physalis peruviana Php00a01143.07288 mRNA sequence.
JO131382.1:747-768
TCTTTGCTTCCGTGTTGTTCATTTCTTTCA747TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGCCTCCCCTGC
TSA: Physalis peruviana Php00a01143.07289 mRNA sequence.
JO131383.1:739-760
TCTTTGCTTCCGTGTTGTTCATTTCTTTCA739TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGCCTCCCCTGC
TSA: Physalis peruviana Php00a01143.07290 mRNA sequence.
JO131384.1:747-768
TCTTTGCTTCCGTGTTGTTCATTTCTTTCA747TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGCCTCCCCTGC
TSA: Physalis peruviana Php00a01143.07291 mRNA sequence.
JO131385.1:739-760
TCTTTGCTTCCGTGTTGTTCATTTCTTTCA739TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGCCTCCCCTGC
TSA: Nicotiana benthamiana isotig05753.Nb_leaf mRNA sequence.
KA741997.1:803-824
CTTTTCTTCCATGCAGTTCAATTTCTTTCA803TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTCTCCCCTTC
PPTAD76TF Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY123_M08, genomic survey sequence.
ER843858.1:508-529
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA508TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTATTAGTCTCCCCTGC
LuSp066E16_1061063870664_TP POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp066E16, genomic survey sequence.
GS302164.1:133-154
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA133TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTCTCCCCTCC
Solanum lycopersicum chromosome 7 clone C07SLe0020F06, *** SEQUENCING IN PROGRESS ***.
AC210367.1:112016-112037
CTTTGCTTCCATGTTGTTCGATTTCTTTCA112016TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum lycopersicum chromosome 7 clone C07SLe0020F06, *** SEQUENCING IN PROGRESS ***.
AC210367.1:116765-116786
CATTGCTTCTGTGTTGTTTAATTTCTCTCA116765TATTGGATTCAAGTAATATGCCTAATAAGTCAGTTTTACTAGCCTCCCCTGC
Solanum tuberosum cultivar RH89-039-16 chromosome 7 clone RH142A12, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
AC240025.1:9646-9667
CCTTGTTTCCGTGTTGTTCAATTTCTTTCA9646TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTTTCCCCTGC
Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0166A09, complete sequence.
AC210359.1:98646-98667
CCTTGTTTCCGTGTTGTTCAATTTCTTTCA98646TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGCCTCCCCTGC
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:65957396-65957417
CTTTGCTTCCATGTTGTTCGATTTCTTTCA65957396TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:65962144-65962165
CATTGCTTCTGTGTTGTTTAATTTCTCTCA65962144TATTGGATTCAAGTAATATGCCTAATAAGTCAGTTTTACTAGCCTCCCCTGC
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:65970382-65970403
CTTTGTTTCCGTGTTGTTCAATTTCTTTCA65970382TATTGGATTCAAGTAATATGCCTAATAAATCATCTTTACTAGTCTCCCCTGC
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:65993559-65993580
CTTTGTTTCCATGTTGTTCAATTTCTTTCG65993559TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTGTTACTAGTCTC
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:66017912-66017933
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA66017912TATTGGATTCAAGTAATATGCCTAGTAAGTCATCTTTACTAGTCTCCCCTCC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63423835-63423856
CATTGCTTCTGTGTTGTTTAATTTCTCTCA63423835TATTGGATTCAAGTAATATGCCTAATAAGTCAGTTTTACTAGCCTCCCCTGC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63476807-63476828
CTTTGCTTCCATGTTGTTCGATTTCTTTCA63476807TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63481548-63481569
CATTGCTTCTGTGTTGTTTAATTTCTCTCA63481548TATTGGATTCAAGTAATATGCCTAATAAGTCAGTTTTACTAGCCTCCCCTGC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63489773-63489794
CTTTGTTTCCGTGTTGTTCAATTTCTTTCA63489773TATTGGATTCAAGTAATATGCCTAATAAATCATCTTTACTAGTCTCCCCTGC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63508244-63508265
CTTTGTTTCCATGTTGTTCAATTTCTTTCG63508244TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTATTACTAGTCTC
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63532892-63532913
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA63532892TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTCTCCCCTCC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50548996-50549017
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50548996TATTGGATTCAAGTAATATGCCTAATACRTCTTTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50564405-50564426
CTTTGCTTCCRTGTTGTTCAATTTCTTTCA50564405TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50569276-50569297
CTTTGCTTCTGTGTTGTTCAATTTCTCTCA50569276TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTYTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50574188-50574209
CTTTGCTTCCRTGTTGTTCAATTTCTTTCA50574188TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGGCTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50584644-50584665
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50584644TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50590276-50590297
CCTTGCTTCCRTGTTGTTCAATTTCTTTCA50590276TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCSTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50594419-50594440
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50594419TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTAYTAGTCTCCCCTSC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50609936-50609957
CTTTGCTTCCGTGTTGTTCAATTTCTTTCG50609936TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTAGTCTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50611242-50611263
CTTTGCTTCCRTGTTGTTCAATTTCTTTCG50611242TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTAGTCTCCCCTGC
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50626613-50626634
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50626613TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTWGKCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50549848-50549869
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50549848TATTGGATTCAAGTAATATGCCTAATAYRTCTTTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50565257-50565278
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50565257TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50570128-50570149
CTTTGCTTCTGTGTTGTTCAATTTCTCTCA50570128TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTYTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50575040-50575061
CTTTGCTTCCATGTTGTTCAATTTCTTTCA50575040TATTGGATTCAAGTAATATGCCTAANAAGTCATTTTTACTAGGCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50585496-50585517
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50585496TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50591128-50591149
CCTTGCTTCCRTGTTGTTCAATTTCTTTCA50591128TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGKCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50595271-50595292
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50595271TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTAYTAGTCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50610788-50610809
CTTTGCTTCCGTGTTGTTCAATTTCTTTCG50610788TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTAGTCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50612094-50612115
CTTTGCTTCCGTGTTGTTCAATTTCTTTCG50612094TATTGGATTCAAGTAATATGCCTAATAARTCTTCATTATTAGTCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50617065-50617086
CTTTTCTACCATGAAGTTCRATTTCTTTCA50617065TATTGGATTCAAGTAATATGCCCAATAAGTCATCTTTACTAGTCTCCCCTCC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50627465-50627486
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50627465TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTWGKCTCCCCTGC
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50639042-50639063
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50639042TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTCTCCCCTCC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50535992-50536013
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50535992TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTKC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50551401-50551422
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50551401TATTGGATTCAAGTAATATGCCTARTAAGTCATTTTTACTAGTCTCCCCTKC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50556272-50556293
CTTTGCTTCTGTGTTGTTCAATTTCTCTCA50556272TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTCTCCCCTGC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50571640-50571661
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50571640TATTGGATTCAAGTAATATGCCTARTAAGTCATTTTTACTAGTCTCCCCTKC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50577272-50577293
CCTTGCTTCCGTGTTGTTCAATTTCTTTCA50577272TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGGCTCNCCTGC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50581415-50581436
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50581415TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTCTCCCCTCC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50593838-50593859
CTTTGCTTCCGTGTTGTTCAATTTCTTTCG50593838TATTGGATTCAAGTAATATGCCTAATAAGTCTTCATTATTAGTCTCCCCTGC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50596932-50596953
CTTTGCTTCCGTGTTGTTCAATTTCTTTCG50596932TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTAGTCTCCCCTGC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50598238-50598259
CTTTGCTTCCGTGTTGTTCAATTTCTTTCG50598238TATTGGATTCAAGTAATATGCCTAATAAGTCTTCATTATTAGTCTCCCCTGC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50603209-50603230
CTTTTCTACCATGAAGTTCAATTTCTTTCA50603209TATTGGATTCAAGTAATATGCCCAATAAGTCATCTTGACTAGTCTCCCCTCC
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50613609-50613630
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA50613609TATTGGATTCAAGTAATATGCCTAATAAGTCATCATTACTCGTCTCCCCTGC
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:32977255-32977276
TCTTTGCTTCCGTGTTGTTCAATTTCTTCA32977255TATTGGATTCAAGTAATATGCCTAATACGTCTTTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:33002583-33002604
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA33002583TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:33013007-33013028
CTTTGCTTCTGTGTTGTTCAATTTCTCTCA33013007TATTGGATTCAAGTAATATGCCTAATAAGTCATCTTTACTAGTTTCCCTGCT
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:33017914-33017935
CTTTGCTTCCATGTTGTTCAATTTCTTTCA33017914TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGGCTCCCCTGC
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:33023851-33023872
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA33023851TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64429748-64429769
CTTTGCTTCCATGTTGTTCGATTTCTTTCA64429748TATTGGATTCAAGTAATATGCCTAATAAGTCATTTTTACTAGTCTCCCCTGC
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64434498-64434519
CATTGCTTCTGTGTTGTTTAATTTCTCTCA64434498TATTGGATTCAAGTAATATGCCTAATAAGTCAGTTTTACTAGCCTCCCCTGC
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64442720-64442741
CTTTGTTTCCGTGTTGTTCAATTTCTTTCA64442720TATTGGATTCAAGTAATATGCCTAATAAATCATCTTTACTAGTCTCCCCTGC
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64461187-64461208
CTTTGTTTCCATGTTGTTCAATTTCTTTCG64461187TATTGGATTCAAGTAATATGCCTAATAAATCTTCATTATTGTTACTAGTCTC
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64485887-64485908
CTTTGCTTCCGTGTTGTTCAATTTCTTTCA64485887TATTGGATTCAAGTAATATGCCTAGTAAGTCATCTTTACTAGTCTCCCCTCC
Cerastis leucographa genome assembly, chromosome: 7.
OY720385.1:13174475-13174496
CCTTTCTTGCCATAAGCAATTCCCCTAAAT13174475TATTGGATTCAAGTAATATGCCTCTACTTGTAAAAATACGTATAAAGATGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TATTGGATTCAAGTAATATGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TATTGGATTCAAGTAATATGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.233 | 0.224 | search_plus_done; http://172.18.8.135:50400/match?q=TATTGGATTCAAGTAATATGCC&k=0&no_gap=0&offset=0&limit=50
0.295 | 0.062 | search_minus_done; http://172.18.8.135:50400/match?q=GGCATATTACTTGAATCCAATA&k=0&no_gap=0&offset=0&limit=0
0.295 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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