GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 16:50:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Anas platyrhynchos genome assembly, chromosome: 2.
LS423612.1:19625707-19625726
ATTCTTTCTCCTTAATACCCTATTGCTCTG19625707TCACACTCACCTTTATCTTCATCATGAGCTTTGTCATTGAGACAGATTGC
Anas acuta genome assembly, chromosome: 2.
OZ009963.1:20370076-20370095
ATTCTTTCTCCTTAATACCCTATTGCTCTG20370076TCACACTCACCTTTATCTTCATCATGAGCTTTGTCATTGAGACAGATTGC
Sequence 23318 from patent US 8067671.
GY556380.1:479-498
GATTAGCTGATTACCCACGGTTGTGTTCTT479TCACACTCACCTTTATCTTCGTTTGGTCATTTTAGTTCGAATGATTTCCA
Sequence 23318 from patent US 8088976.
GY883815.1:479-498
GATTAGCTGATTACCCACGGTTGTGTTCTT479TCACACTCACCTTTATCTTCGTTTGGTCATTTTAGTTCGAATGATTTCCA
4_Tbi_b3v08.
OD571765.1:9073-9092
CACTGTCCTCTTTAAGACCAAGCACATTCT9073TCACACTCACCTTTATCTTCGCTCGCTGTTACTTCTCTTATCATTAGTAG
4_Tte_b3v08.
OE000121.1:316974-316993
CACTGTCCTCTTTAAGACCAAGCACATTCT316974TCACACTCACCTTTATCTTCGCTCGCTGTTACTTCTCTTATCATTAGTAG
Heterobilharzia americana genome assembly, chromosome: 3.
OX104129.1:28830148-28830167
AATCCTTAGCACCTTCTAAAGCTCGAATAT28830148TCACACTCACCTTTATCTTCAAACTGCTTATTCTTTTACACAACTTTGCC
Sepiola atlantica genome assembly, chromosome: 15.
OY744529.1:15661276-15661295
TTCTTCATCATTCAATCGACAATCTATCAA15661276TCACACTCACCTTTATCTTCATGTATCTTTTGCCACTGATGGTGACTCAT
Acomys dimidiatus genome assembly, chromosome: 13.
OU015386.1:23406866-23406885
GAGTGTGAAGCTGCAGGTGAGGGTGAGTAT23406866GAAGATAAAGGTGAGTGTGAAGATGGAGGTGAGGGTGAGTGTGAAGATGG
Danio kyathit genome assembly, chromosome: 18.
LR812536.1:62003390-62003409
TCACAGTTTTTCTTCTAACATTTAAAATTT62003390GAAGATAAAGGTGAGTGTGATAAAACCAGTCCAAAAACTTTCTTTCCAAA
Narthecium ossifragum genome assembly, chromosome: 1.
OY986963.1:31625516-31625535
GACGACGAGGATGACGATGAAGACGATGAA31625516GAAGATAAAGGTGAGTGTGATGATTAGAAAGCCACTGTTGGTAAGAAGAT
Narthecium ossifragum genome assembly, chromosome: 1.
OY986963.1:31683210-31683229
GAGGACGAGGATGACGATGAAGATGATGAA31683210GAAGATAAAGGTGAGTGTGATGATTNNNNNNNNNNNNNNNNNNNNNNNNN
Heterodera glycines isolate TN10 chromosome 4.
CP049708.1:10053369-10053388
TGGAAATCATTCGAACTAAAATGACCAAAC10053369GAAGATAAAGGTGAGTGTGACAGAACACAACCGTGGGTAATCAGCTAATC
Adineta vaga breed AD008 chromosome 3.
CP075492.1:769658-769677
ACAAACCTTTTCTTGAATGGGGTAAGGGGC769658GAAGATAAAGGTGAGTGTGAATGTAGGTTAAGTCGTCGTTATCGTCTTCG
Heterobilharzia americana genome assembly, chromosome: 2.
OX104104.1:62674013-62674032
AGATAAGGCTATGTGAAAGAATCAGCAACT62674013GAAGATAAAGGTGAGTGTGATTATTCAATCTTTAGAGGACGTCAAAGAGT
Heterobilharzia americana genome assembly, chromosome: 2.
OX104128.1:63568179-63568198
AGATAAGGCTATGTGAAGGAATCAGCAACT63568179GAAGATAAAGGTGAGTGTGATTATTCAATCATTAGAGGACGTCAAAGAGT
Sepiola atlantica genome assembly, chromosome: 1.
OY744515.1:249895996-249896015
ATGTGGATTTTTCAAGCCACTCAACATTCT249895996GAAGATAAAGGTGAGTGTGATTCTTTATCCTCTTATTTGGCATGAAACAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCACACTCACCTTTATCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACACTCACCTTTATCTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.176 | 0.167 | search_plus_done; http://172.18.8.135:50400/match?q=TCACACTCACCTTTATCTTC&k=0&no_gap=0&offset=0&limit=50
0.204 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGATAAAGGTGAGTGTGA&k=0&no_gap=0&offset=0&limit=42
0.210 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).