GGGenome | Results

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2025-04-16 14:21:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Daucus carota subsp. sativus cultivar DH1 chromosome 2.
CP093344.1:46995833-46995852

AGTAACCAAATGTACCAAGCACTCTAGCAG46995833TCACATAGGTTTCATGGCCATCTGGCATTAACTTTGCAAGCCCAAAATCC

Daucus carota isolate Kuroda chromosome 2.
CP125302.1:44883632-44883651

AGTAACCAAATGTACCAAGCACTCTAGCAG44883632TCACATAGGTTTCATGGCCATCTGGCATTAACTTTGCAAGCCCAAAATCC

Siphonodentalium dalli isolate Sc116.8C chromosome I.
CP136061.1:111140923-111140942

GTAACCTCATTCGGTTCCAGAGATATAAAT111140923TGGCCATGAAACCTATGTGAATTTGGTTCCTTTGAGTACCAACTGACCAC

Siphonodentalium dalli isolate Sc116.8C chromosome VI.
CP136066.1:178406836-178406855

ACCCATTCCTTTGGTTCCAGAGATATAAAC178406836TGGCCATGAAACCTATGTGAATTTTTGTTCCTTGGCGTATCTACTGGGCG

Siphonodentalium dalli isolate Sc116.8C chromosome IX.
CP136069.1:36429723-36429742

TTGGTGTAAATTCCTTCCAGAGAGATAACA36429723TGGCCATGAAACCTATGTGACTTTGTTCCGTGGAGAATTAACCGGTCACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=TCACATAGGTTTCATGGCCA&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCCATGAAACCTATGTGA&k=0&no_gap=0&offset=0&limit=48
0.130 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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