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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 03:08:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS08_0002D16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D16, mRNA sequence.
CV713032.1:203-222
CTGACGCGTACAACCCCCGCGGCGGACGCG203TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS08_0005G10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0005G10, mRNA sequence.
CV715192.1:365-384
CTGACGCGTACCACCCCCGCGGCGGACGCG365TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS08_0006M19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0006M19, mRNA sequence.
CV716090.1:164-183
CTGACGCGTACAACCCCCGCGGCGGACGCG164TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_16B11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B11-C21-1-5.g, mRNA sequence.
CX047730.1:585-604
CTGACGCGTACAACCCCCGCGGCGGACGCG585TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_17F05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-17F05-K10-1-5.b, mRNA sequence.
CX047954.1:178-197
CTGATGTCTACAACCCCCGGGCCGGACGTG178TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
UCRCS09_18H06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-18H06-P11-1-5.b, mRNA sequence.
CX048097.1:282-301
CTGATGTCTACAACCCCCGGGCCGGACGTG282TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
UCRCS09_21C11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-21C11-E22-1-6.g, mRNA sequence.
CX048510.1:172-191
CTGATGTCTACAACCCCCGGGCCGGACGTG172TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
UCRCS09_28H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-28H08-O15-1-4.b, mRNA sequence.
CX049665.1:56-75
CTGACGCGTACAACCCCCGCGGCGGACGCG56TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_30B02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-30B02-D3-1-4.b, mRNA sequence.
CX050039.1:439-458
CTGACGCGTACAACCCCCGCGGCGGACGCG439TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_30E12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-30E12-J23-1-6.g, mRNA sequence.
CX050125.1:492-511
CTGACGCGTACAACCCCCGCGGCGGACGCG492TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_32F06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-32F06-K11-1-4.g, mRNA sequence.
CX050476.1:607-626
CTGACGCGTACAACCCCCGCGGCGGACGCG607TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_35E10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-35E10-J20-1-6.b, mRNA sequence.
CX050939.1:369-388
CTGACGCGTACAACCCCCGCGGCGGACGCG369TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_38F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-38F12-L23-1-6.g, mRNA sequence.
CX051272.1:527-546
CTGACGCGTACAACCCCCGCGGCGGACGCG527TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_38H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-38H09-P17-1-5.g, mRNA sequence.
CX051276.1:527-546
CTGACGCGTACAACCCCCGCGGCGGACGCG527TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_40C05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-40C05-E9-1-7.b, mRNA sequence.
CX051488.1:77-96
CTGACGCGTACAACCCCCGCGGCGGACGCG77TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_41F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-41F12-K24-1-7.g, mRNA sequence.
CX051732.1:695-714
CTGATGTCTACAACCCCCGGGCCGGACGTG695TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
UCRCS09_43H04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-43H04-P8-1-6.g, mRNA sequence.
CX052091.1:739-758
CTGACGCGTACAACCCCCGCGGCGGACGCG739TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCG
UCRCS09_44A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-44A08-A15-1-6.g, mRNA sequence.
CX052115.1:74-93
CTGACGCGTACAACCCCCGCGGCGGACGCG74TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_47D12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-47D12-H24-1-6.g, mRNA sequence.
CX052687.1:607-626
CTGACGCGTACAACCCCCGCGGCGGACGCG607TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_5F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-5F10-K20-1-5.b, mRNA sequence.
CX053378.1:440-459
CTGACGCGTACAACCCCCGCGGCGGACGCG440TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS09_6G06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-6G06-N11-1-5.g, mRNA sequence.
CX053557.1:379-398
CTGATGTCTACAACCCCCGGGCCGGACGTG379TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
UCRCS09_9A01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9A01-A2-1-4.b, mRNA sequence.
CX053900.1:369-388
CTGACGCGTACAACCCCCGCGGCGGACGCG369TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
UCRCS08_60B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B03-C6-1-5.g, mRNA sequence.
CX675142.1:155-174
CTGACGCGTACAACCCCCGCGGCGGACGCG155TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
PT11-C9-005-002-D06-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838413.1:202-221
CTGACGTCTACAACCCCCGGGCCGGACGTG202TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-002-H08-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838451.1:243-262
CTGACGTCTACAACCCCCGGGCCGGACGTG243TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-003-E09-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838487.1:429-448
CTGACGTCTACAACCCCCGGGCCGGACGTG429TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-003-H03-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838506.1:324-343
CTGACGTCTACAACCCCCGGGCCGGACGTG324TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-007-A06-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838604.1:140-159
CTGACGTCTACAACCCCCGGGCCGGACGTG140TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-007-B08-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838617.1:143-162
CTGACGTCTACAACCCCCGGGCCGGACGTG143TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-007-C04-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838625.1:32-51
CACGCGTCCGCAACCCCCGGGCCGGACGTG32TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-007-C05-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838626.1:32-51
CACGCGTCCGCAACCCCCGGGCCGGACGTG32TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-008-B10-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838703.1:371-390
CTGACGTCTACAACCCCCGGGCCGGACGTG371TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-004-A05-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838853.1:45-64
ACGCGTCCCACAACCCCCGGGCCGGACGTG45TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-004-C08-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838878.1:472-491
CTGACGTCTACAACCCCCGGGCCGGACGTG472TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-004-E05-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838897.1:57-76
CTGACGTCTACAACCCCCGGGCCGGACGTG57TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-004-F01-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838903.1:145-164
CGTCCGGTCTAAACCCCCGGGCCGGACGTG145TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-004-G02-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838913.1:495-514
CTGACGTCTACAACCCCCGGGCCGGACGTG495TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-004-H07-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838927.1:131-150
CTGACGTCTACAACCCCCGGGCCGGACGTG131TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-005-D07-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY838968.1:429-448
CTGACGTCTACAACCCCCGGGCCGGACGTG429TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-005-H09-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839016.1:334-353
CTGACGTCTACAACCCCCGGGCCGGACGTG334TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-011-A06-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839104.1:533-552
CTGACGTCTACAACCCCCGGGCCGGACGTG533TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-011-C09-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839130.1:273-292
CTGACGTCTACAACCCCCGGGCCGGACGTG273TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-012-C06-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839210.1:102-121
CTGACGTCTACAACCCCCGGGCCGGACGTG102TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-012-F07-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839242.1:377-396
CTGACGTCTACAACCCCCGGGCCGGACGTG377TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-012-F10-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839245.1:428-447
CTGACGTCTACAACCCCCGGGCCGGACGTG428TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-012-G06-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839251.1:431-450
CTGACGTCTACAACCCCCGGGCCGGACGTG431TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-013-F02-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839320.1:377-396
CTGACGTCTACAACCCCCGGGCCGGACGTG377TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-013-H04-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839344.1:74-93
CTGACGTCTACAACCCCCGGGCCGGACGTG74TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-015-B07-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839454.1:243-262
CTGACGTCTACAACCCCCGGGCCGGACGTG243TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
PT11-C9-005-016-D02-CT.F Poncirus trifoliata seed, field plant Citrus trifoliata cDNA, mRNA sequence.
EY839556.1:98-117
CTGACGTCTACAACCCCCGGGCCGGACGTG98TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 6H.
LR828092.1:143705854-143705873
TGAATCCCCGAGTGTCTCTGTCGCTGGGAA143705854TCACCACCGTCAACAGATTCCTCACCGTCGTCGTCGCCGTAGCCAGACCA
Zanthoxylum bungeanum 11S globulin isoform X1 mRNA, partial cds.
MZ293068.1:794-813
CTGACGTGTACAACCCTCGAGGCGGACGTG794TCACCACCGTCAACAGATTCAATCTTCCTGTCCTTCGATGGCTCCAGCTT
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX459975.1:150539072-150539091
TGAATCCCCGAGTGTCTCTGTCGCTGGGAA150539072TCACCACCGTCAACAGATTCCTCACCGTCGTCGTCGCCGTAGCCAGACCA
Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:26300984-26301003
CTGACGCGTACAACCCCCGCGGCGGACGCG26300984TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGATACATTCAGCTT
Citrus sinensis seed storage protein citrin mRNA, complete cds.
U38914.1:1053-1072
CTGATGTCTACAACCCCCGGGCCGGACGTG1053TCACCACCGTCAACAGATTCAACCTTCCTATCCTTCGAGACCTCCAGCTT
Plagodis dolabraria genome assembly, chromosome: 12.
OY978452.1:18475062-18475081
CCATACCAATCAAAGCTCGCCCACAAGTCC18475062TCACCACCGTCAACAGATTCCAGCTCTGGATGCCGACGTAATGTGATAGG
Plagodis dolabraria genome assembly, chromosome: 25.
OY978465.1:1318318-1318337
CCGTACCAATCAAAGCTTGCCCACAAGTCC1318318TCACCACCGTCAACAGATTCCAGCTCTGGATGCCGACGTAATGTGATAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCACCACCGTCAACAGATTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACCACCGTCAACAGATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.844 | 2.835 | search_plus_done; http://172.18.8.135:50400/match?q=TCACCACCGTCAACAGATTC&k=0&no_gap=0&offset=0&limit=50
2.899 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=GAATCTGTTGACGGTGGTGA&k=0&no_gap=0&offset=0&limit=0
2.899 | 0.000 | cgi_end;

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