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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:24:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus cDNA clone:MPDL016c05_f, 3' end.
AV777302.1:348-367
CTCTTCTTCTTGTATGTTGGAGTGATAAGG348TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Lotus japonicus cDNA clone:MPDL071d08_f, 3' end.
AV780132.1:330-349
CTCTTCTTCTTGTATGTGGGAGTGATAAGG330TCACGTTCCATGTCAAATGGTACTGGGTCAAGAGTGAACTGCTCTTATAA
Lotus japonicus cDNA clone:MPDL075f09_f, 3' end.
AV780377.1:260-279
CTCTTCTTCTTGTATGTGGGAGTGATAAGG260TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
GM700017B10C6 Gm-r1070 Glycine max cDNA clone Gm-r1070-6659 3', mRNA sequence.
BE822425.1:322-341
CTCTTCTTCTTGTATGTTGGAGTGATAAGG322TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
sab27g09.y1 Gm-c1026 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1026-2994 5' similar to TR:O65748 O65748 ACYL-COA SYNTHETASE, mRNA sequence.
BG154849.1:99-118
CTCTTCTTCTTGTATGTTGGAGTGATAAGG99TCACGTTCCATGTCAAATGGAATTGGGTCAAGGTGAACTGGTTTTATAAA
Glycine max cDNA clone: GMFL01-29-A09, 3'end.
BW668488.1:241-260
CTCTTCTTCTTGTATGTTGGAGTGATAAGG241TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
Glycine max cDNA clone: GMFL01-29-N09, 3'end.
BW669063.1:293-312
CTCTTCTTCTTGTATGTTGGAGTGATAAGG293TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
Glycine max cDNA clone: GMFL01-48-I23, 3'end.
BW681864.1:221-240
CTCTTCTTCTTGTATGTTGGAGTGATAAGG221TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
EST751008 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMBF32 3' end, mRNA sequence.
CK288286.1:264-283
CTTTTCTTCTTAAATGTAGGAGTTAGAAGG264TCACGTTCCATGTCAAATGGCTGAGCATCAAGGTGTACAGCTTTTATGAA
GM89019A2B06.r1 Gm-r1089 Glycine max cDNA clone Gm-r1089-6972 3, mRNA sequence.
CO983564.1:150-169
CTCTTCTTCTTGTATGTTGGAGTGATAAGG150TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
gmrtDrNS01_31-A_M13R_F07_053.s3 Water stressed 48h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX701916.1:349-368
CTCTTCTTCTTGTATGTTGGAGTGATAAGG349TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
gmrtDrNS01_28-B_M13R_H09_065.s3 Water stressed 48h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX704340.1:349-368
CTCTTCTTCTTGTATGTTGGAGTGATAAGG349TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
gmrtDrNS01_33-D_M13R_E04_024.s3 Water stressed 48h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX712164.1:349-368
CTCTTCTTCTTGTATGTTGGAGTGATAAGG349TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
UCRVU04_CCNI12430_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI12430.g1, mRNA sequence.
FG812052.1:280-299
CTCTTCTTCTTATATGTTGGAGTGATAAGG280TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
UCRVU04_CCNI13528_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI13528.g1, mRNA sequence.
FG829306.1:262-281
CTCTTCTTCTTATATGTTGGAGTGATAAGG262TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
UCRVU05_CCNN18370_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN18370.g1, mRNA sequence.
FG853083.1:261-280
CTCTTCTTCTTATATGTTGGAGTGATAAGG261TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
UCRVU08_CCNS1067_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS1067.g1, mRNA sequence.
FG889355.1:319-338
CTCTTCTTCTTATATGTTGGAGTGATAAGG319TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
UCRVU08_CCNS11019_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS11019.g1, mRNA sequence.
FG890000.1:276-295
CTCTTCTTCTTATATGTTGGAGTGATAAGG276TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
Fagus sylvatica EST, clone WZ0AFSCA15YP21NM1.
FR598150.1:228-247
CTCTTCTTCTTATATGTTGGGGTGATAAGG228TCACGTTCCATGTCAAATGGTTCCGGATCAAGGTGAACAGCTCTTACCAT
Lotus japonicus cDNA, clone: LjFL3-002-DD12.r0, 3'-end sequence.
FS345808.1:303-322
CTCTTCTTCTTGTATGTTGGAGTGATAAGG303TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Lotus japonicus cDNA, clone: LjFL3-007-CC01.r0, 3'-end sequence.
FS347228.1:315-334
CTCTTCTTCTTGTATGTTGGAGTGATAAGG315TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Lotus japonicus cDNA, clone: LjFL3-021-DC07.r0, 3'-end sequence.
FS351803.1:315-334
CTCTTCTTCTTGTATGTTGGAGTGATAAGG315TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
LJGA615TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence.
GO013779.1:38-57
CTCTTCTTCTTGTATGTTGGAGTGATAAGG38TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
VBL6_37_G23_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO331919.1:353-372
CGCTTCATCTTATATGTGGGAGTAATAAGG353TCACGTTCCATGTCAAATGGAACTGGGTCTAGATGAACGTCTTTTATAAA
CCOP2787.g1 CCOP Avena barbata leaf, grown under ambient rainfall (L) Avena barbata cDNA clone CCOP2787 3', mRNA sequence.
GR321027.1:28-47
TTCCTTTTATATGTTGGAGTGATCAAA28TCACGTTCCATGTCAAATGGCACTGGGTCAAGATGTACAGCTCTTACGAA
CCOS1507.g1 CCOS Avena barbata leaf, grown under high rainfall (H) Avena barbata cDNA clone CCOS1507 3', mRNA sequence.
GR323998.1:28-47
TTCCTTTTATATGTTGGAGTGATCAAA28TCACGTTCCATGTCAAATGGCACTGGGTCAAGATGTACAGCTCTTACGAA
CCOT710.g1 CCOT Avena barbata leaf, grown under high rainfall (L) Avena barbata cDNA clone CCOT710 3', mRNA sequence.
GR332740.1:28-47
TTCCTTTTATATGTTGGAGTGATCAAA28TCACGTTCCATGTCAAATGGCACTGGGTCAAGATGTACAGCTCTTACGAA
CCOU930.g1 CCOU Avena barbata leaf, pooled from different levels of rain and nitrogen (H) Avena barbata cDNA clone CCOU930 3', mRNA sequence.
GR338243.1:28-47
TTCCTTTTATATGTTGGAGTGATCAAA28TCACGTTCCATGTCAAATGGCACTGGGTCAAGATGTACAGCTCTTACGAA
CCOX6734.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) Avena barbata cDNA clone CCOX6734 3', mRNA sequence.
GR354268.1:28-47
TTCCTTTTATATGTTGGAGTGATCAAA28TCACGTTCCATGTCAAATGGCACTGGGTCAAGATGTACAGCTCTTACGAA
CCCC21149.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC21149 3', mRNA sequence.
GR856852.1:403-422
CTCTTCTTCTTGTATGTTGGAGTGATAAGG403TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
vsu-ars_015418_LI10Contig_17691 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO790385.1:343-362
CTCTTCTTCTTATATGTTGGGGTGATAAGG343TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
vsu-ars_022367_LI15contig_7070 VSU-ARS-L15 Phaseolus acutifolius cDNA, mRNA sequence.
HO797334.1:274-293
CTCTTCTTCTTATATGTTGGGGTGATAAGG274TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
Elaeis guineensis EST, clone (6lib)_isotig17751.
LM617564.1:68-87
CGCTTCTTCTTGTAGGTTGGGGTAAGCAGA68TCACGTTCCATGTCAAATGGTACAGGGTCAAGATGAACAGCTTTTATGAA
TSA: Cajanus cajan cultivar Asha contig30300.Asha mRNA sequence.
EZ678164.1:309-328
CTCTTCTTCTTATATGTTGGAGTGATAAGG309TCACGTTCCATGTCAAATGGAACTGGGTCAAGGTGAACTCCTTTTATAAA
TSA: Arachis hypogaea CL1Contig6941.Arhy mRNA sequence.
EZ727925.1:332-351
CTCTTCATCTTATATGTGGGAGTTATAAGG332TCACGTTCCATGTCAAATGGAACTGGGTCTAGATGAACGTCTTTTATAAA
TSA: Arachis hypogaea CL1Contig12791.Arhy mRNA sequence.
EZ733775.1:351-370
CTCTTCATCTTATATGTGGGAGTAATAAGG351TCACGTTCCATGTCAAATGGAACTGGGTCTAGATGAACGTCTTTTATAAA
TSA: Pisum sativum Ps_contig_mira-ass_103076 mRNA sequence.
JI971882.1:32-51
GTTTTTTTCTTAAATGTTGGTGTGATAAGG32TCACGTTCCATGTCAAATGGAACTGGTTCAAGATGAACGGCTTTTATGAA
TSA: Elaeis guineensis isotig11658.Elguifruit mRNA sequence.
JO098885.1:227-246
CGCTTCTTCTTGTAGGTTGGGGTAAGCAGA227TCACGTTCCATGTCAAATGGTACAGGGTCAAGATGAACAGCTTTTATGAA
TSA: Sesamum indicum Locus_11538_Transcript_4/5_Confidence_0.643_Length_4903 mRNA sequence.
JP642905.1:2941-2960
CTTTTCTTCTTGTAAGTTGGGGTCAACAAA2941TCACGTTCCATGTCAAATGGTATAGGATCAAGGTGAACAGCTTTGATGAA
TSA: Reaumuria trigyna Unigene61784_T43 mRNA sequence.
JR255218.1:129-148
CGCTTCTTTTTGAAAGTTGGGGTAAGCAGG129TCACGTTCCATGTCAAATGGTACGGGATCAAGGTGAACAGCCCTAATAAC
TSA: Reaumuria trigyna Unigene59144_C21 mRNA sequence.
JR310960.1:129-148
CGCTTCTTTTTGAAAGTTGGGGTAAGCAGG129TCACGTTCCATGTCAAATGGTACGGGATCAAGGTGAACAGCCCTAATAAC
TSA: Arachis duranensis Aduranensis_small_rep_c881_1 mRNA sequence.
JR344028.1:353-372
CTCTTCATCTTATATGTGGGAGTTATAAGG353TCACGTTCCATGTCAAATGGAACTGGGTCTAGATGAACGTCTTTTATAAA
TSA: Nicotiana benthamiana isotig02056.Nb_seed_cap mRNA sequence.
KA760526.1:196-215
CTTTTCTTCTTAAATGTAGGAGTTAGAAGG196TCACGTTCCATGTCAAATGGCTGAGCATCAAGGTGTACAGCTTTTATGAA
1061064169288_TF POTATO-F-03-40KB Solanum phureja genomic clone 1061064169288, genomic survey sequence.
GS699744.1:389-408
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG389TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
UCDJRBES35389 Juglans regia MboI library Juglans regia genomic clone JM027N22, genomic survey sequence.
HR225096.1:659-678
CTCTTCTTCTTATAGGTTGGAGTGGTAAGG659TCACGTTCCATGTCAAATGGCTCAGGATCAAGGTGAACAGCTTTAATAAA
Lotus japonicus genomic DNA, chromosome 2, clone: LjT34D07, TM1166.
AP007861.2:75671-75690
CTCTTCTTCTTGTATGTTGGAGTGATAAGG75671TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Lotus japonicus genomic DNA, chromosome 2, clone: LjT47B15, TM0635.
AP010317.1:25577-25596
CTCTTCTTCTTGTATGTTGGAGTGATAAGG25577TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
AP015043.1:27067731-27067750
CTCTTCTTCTTGTATGTTGGAGTGATAAGG27067731TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:93741034-93741053
CTCTTCTTCTTGTATGTTGGAGTGATAAGG93741034TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Solanum lycopersicum Micro-Tom DNA, chromosome 8, draft genome sequence.
AP028942.1:3512776-3512795
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG3512776TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
Lotus japonicus clone JCVI-FLLj-24I11 unknown mRNA.
BT148521.1:307-326
CTCTTCTTCTTGTATGTTGGAGTGATAAGG307TCACGTTCCATGTCAAATGGTACTGGGTCAAGATGAACTGCTCTTATAAA
Solanum lycopersicum cultivar I-3 chromosome 8.
CP023764.1:2734792-2734811
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG2734792TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
Ipomoea triloba cultivar NCNSP0323 chromosome 10.
CP025669.1:22499213-22499232
CTTTTCTTCTTAAATGTAGGGGTGAGAAGG22499213TCACGTTCCATGTCAAATGGCACTGGATCAAGGTGAACAGCTTTTATAAC
Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:11212359-11212378
CTCTTCATCTTATATGTGGGAGTAATAAGG11212359TCACGTTCCATGTCAAATGGAACTGGGTCTAGATGAACGTCTTTTATAAA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu02.
CP039348.1:39972549-39972568
CTCTTCTTCTTATATGTTGGAGTGATAAGG39972549TCACGTTCCATGTCAAATGGAATCGGGTCAAGATGAACTCCTTTTATAAA
Solanum pinnatisectum cultivar CGN17745 chromosome 8.
CP047564.1:5093071-5093090
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG5093071TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:17347220-17347239
CTCTTCATCTTATATGTGGGAGTAATAAGG17347220TCACGTTCCATGTCAAATGGAACTGGGTCTAGATGAACGTCTTTTATAAA
Solanum tuberosum cultivar Solyntus chromosome 8.
CP055241.1:5440890-5440909
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG5440890TCACGTTCCATGTCAAATGGAATTGGATCAAGGTGTAGAGCTTTTATGAA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:61182041-61182060
CTCTTCTTCTTAAATGTTGGTGTTATTAGA61182041TCACGTTCCATGTCAAATGGAACTGGATCAATATGAACAGCTTTAATAAA
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:56689397-56689416
CTCTTCTTCTTAAATGTTGGTGTTATAAGA56689397TCACGTTCCATGTCAAATGGAACTGGATCAATATGAACAGCTTTAATGAA
Glycine max cultivar Williams 82 chromosome 1.
CP126426.1:58179944-58179963
CTCTTCTTCTTGTATGTTGGAGTGATAAGG58179944TCACGTTCCATGTCAAATGGAATTGAGTCAAGGTGAACTGCTTTTATAAA
Solanum verrucosum cultivar 11H23 chromosome 8.
CP133619.1:4803473-4803492
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG4803473TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
Solanum pennellii chromosome ch08, complete genome.
HG975447.1:2982418-2982437
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG2982418TCACGTTCCATGTCAAATGGTACTGGATCAAGGTGTAGAGCTTTTATGAA
Solanum lycopersicum chromosome ch08, complete genome.
HG975520.1:2734716-2734735
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG2734716TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
Solanum lycopersicum genome assembly, chromosome: 8.
OU640351.1:3529403-3529422
CTTTTCTTCTTAAATGTTGGAGTCAGGAGG3529403TCACGTTCCATGTCAAATGGAACTGGATCAAGGTGTAGAGCTTTTATGAA
Medicago arabica genome assembly, chromosome: 1.
OX326964.1:67852045-67852064
CTCTTTTTCTTAAATGTTGGTGTGAGAAGA67852045TCACGTTCCATGTCAAATGGAACTGGATCAAGATGAACAACTTTAACAAA
Vicia faba genome assembly, chromosome: 6.
OX451741.1:1360671742-1360671761
CTTTTTTTCTTAAATGTTGGTGTGATAAGG1360671742TCACGTTCCATGTCAAATGGAACTGGTTCAAGATGGACGGCTTTTATAAA
Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:65014115-65014134
CTCTTCTTCTTATATGTTGGAGTGATAAGG65014115TCACGTTCCATGTCAAATGGAACTGGATCAAGATGAACTGCTTTTATAAA
Inga oerstediana genome assembly, chromosome: 13.
OY723411.1:22507334-22507353
CTCTTCTTCTTATAAGTCGGAGTGATGAGA22507334TCACGTTCCATGTCAAATGGCTCTGGTTCGAGATGAACAGATTTTATAAA
Viola odorata genome assembly, chromosome: 6.
OY829542.1:61802707-61802726
CTCTTCTTCTTGTAAGTTGGAGTAAGGAGA61802707TCACGTTCCATGTCAAATGGCTCAGCATTAAGGTGAACACCTCTTATAAC
Viola odorata genome assembly, chromosome: 6.
OY829542.1:61829608-61829627
CTCTTCTTCTTGTAAGTTGGAGTAAGGAGA61829608TCACGTTCCATGTCAAATGGCTCAGCATGAAGGTGAACACCTCTTATAAC
Viola odorata genome assembly, chromosome: 9.
OY829545.1:39412891-39412910
CTCTTCTTCTTGTAAGTTGGAGTAAGGAGG39412891TCACGTTCCATGTCAAATGGCTCGGCATCAAGGTGAACAGCTCTTATAAA
Inga laurina genome assembly, chromosome: 10.
OY979710.1:20709034-20709053
CTCTTCTTCTTATAAGTCGGAGTGATGAGA20709034TCACGTTCCATGTCAAATGGCTCTGGTTCGAGATGAACAGATTTCATAAA
Lathyrus sativus genome assembly, chromosome: 7.
OZ012741.1:692090363-692090382
CTTTTTTTCTTAAATGTTGGTGTGATAAGG692090363TCACGTTCCATGTCAAATGGAACTGGTTCAAGATGAACGGCTTTTATAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCACGTTCCATGTCAAATGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACGTTCCATGTCAAATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.256 | 2.247 | search_plus_done; http://172.18.8.135:50400/match?q=TCACGTTCCATGTCAAATGG&k=0&no_gap=0&offset=0&limit=50
2.345 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=CCATTTGACATGGAACGTGA&k=0&no_gap=0&offset=0&limit=0
2.345 | 0.000 | cgi_end;

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