GGGenome | Results

2025-04-16 10:52:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

GQ02819.SP6_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 3', mRNA sequence.
EX322940.1:491-510

AATAAGGCTTCATCGTCTAGTTCAAGCACC491TCATCCAATTTTTCATAGTCATATTCACCACCACTCTGATATTGAATGTC

GQ0191.TB_M21 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0191_M21 3', mRNA sequence.
GE479090.1:638-657

AATAAGGCTTCATCGTCTAGTTCAAGCACC638TCATCCAATTTTTCATAGTCATATTCACCACCACTCTGATATTGAATGTC

Coremacera marginata genome assembly, chromosome: 1.
OU612043.1:76176398-76176417

GTAAGGTAGGCGAGGTTTTCATCCAATTTT76176398TCATCCAATTTTTCATAGTCAGGATTTATATTGATGATCAAAGCTTAAGT

Hipparchia semele genome assembly, chromosome: 25.
OW121733.1:4118232-4118251

TAAAGTCATAATGGTTATGACTTTGACCAG4118232TCATCCAATTTTTCATAGTCGGATTATAGTTTTCAAACTTATTCCTTGTC

Micromys minutus genome assembly, chromosome: 4.
OZ004784.1:80864718-80864737

ATAAATTTGTGTTGAGGAATAGTTACGATT80864718GACTATGAAAAATTGGATGATAGTCCTCAACAGTGAGTTCAAAGAACCAT

GQ02819.B7_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 5', mRNA sequence.
EX322580.1:474-493

GACATTCAATATCAGAGTGGTGGTGAATAT474GACTATGAAAAATTGGATGAGGTGCTTGAACTAGACGATGAAGCCTTATT

WS0478.CR_O01 SS-BD-32 Picea sitchensis cDNA clone WS0478_O01 3', mRNA sequence.
GT127289.1:107-126

GACATTCAATATCAGAGTGGTGGTGAATAT107GACTATGAAAAATTGGATGAGGTGCTTGAACTAGACGATGAAGCCTTATT

Picea glauca clone GQ02819_G13 mRNA sequence.
BT105177.1:474-493

GACATTCAATATCAGAGTGGTGGTGAATAT474GACTATGAAAAATTGGATGAGGTGCTTGAACTAGACGATGAAGCCTTATT

Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 11.
CP124709.1:75233246-75233265

CGAGGGACTCCGGTCACTTTACGGAAGAAC75233246GACTATGAAAAATTGGATGACTATGAGCAGGACGATTGAATGGATGGGGT

Viscum album genome assembly, chromosome: 10_4.
OY728166.1:1192049656-1192049675

TGATCCAACCAAGATATGATACCTCATTAA1192049656GACTATGAAAAATTGGATGATACAACACCCTCTATATATGTTAGGCCAGG

Viscum album genome assembly, chromosome: 10_4.
OY728166.1:1325383361-1325383380

AGCTGTTTGAATAAGAAGTTTCCGAATAAA1325383361GACTATGAAAAATTGGATGAATAATGGAATTGAATTTAATAACACTACAC

Platycnemis pennipes genome assembly, chromosome: 1.
OW121847.1:46801666-46801685

CATAGTGGTGGAGGTTTATATGCCATGACA46801666GACTATGAAAAATTGGATGAGGTCTATGAAGATATCACAGAAGTAATATT

Maratus speciosus genome assembly, chromosome: 10.
OZ010797.1:92699076-92699095

ACATTTTAATTGCCATTCCAGACTTTCTCA92699076GACTATGAAAAATTGGATGACCATTAGAACATCAATCATCAAAATACTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.243 | 0.234 | search_plus_done; http://172.18.8.135:50400/match?q=TCATCCAATTTTTCATAGTC&k=0&no_gap=0&offset=0&limit=50
0.404 | 0.161 | search_minus_done; http://172.18.8.135:50400/match?q=GACTATGAAAAATTGGATGA&k=0&no_gap=0&offset=0&limit=46
0.410 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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