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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:05:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

odd88f05.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH961212.1:427-446
CATCTTCTCCATTGATCTTAAGACAAATGA427TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:4287989-4288008
CATCTTCTCCATTGATCTTAAGACAAATGA4287989TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55326656-55326675
CATCTTCTCCATTGATCTTAAGACAAATGA55326656TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:55986504-55986523
CATCTTCTCCATTGATCTTAAGACAAATGA55986504TCCAACACCAAACAAGCTGAATATATCAAGAAAAAGAGTTTTCTTTGGTA
Lagria hirta genome assembly, chromosome: 7.
OX375801.1:23578480-23578499
CAACAAAACAATCAACATATTATATTACAA23578480TCCAACACCAAACAAGCTGATCATATTCAAAAAACCCAACCTCTACTTGT
Apotomis capreana genome assembly, chromosome: 15.
OX392513.1:14821271-14821290
CCATCGCAAGTTGCCGGAGTTATCCGGATC14821271TCCAACACCAAACAAGCTGAACAAGTTTTCTGCTCGAACAACACGTGTGC
BNZB_UP_064_H06_14MAY2004_034 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE560989.1:330-349
TACCAAAGAAAACTCTTTTTCTTGATATAT330TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica rapa subsp. pekinensis clone KBrH133F05, complete sequence.
FP340389.1:24883-24902
TACCAAAGAAAACTCTTTTTCTTGATATAT24883TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19310821-19310840
TACCAAAGAAAACTCTTTTTCTTGATATAT19310821TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica napus genome assembly, chromosome: A08.
HG994362.1:21968815-21968834
TACCAAAGAAAACTCTTTTTCTTGATATAT21968815TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica rapa genome, scaffold: A08.
LR031575.1:20865178-20865197
TACCAAAGAAAACTCTTTTTCTTGATATAT20865178TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:26651064-26651083
TACCAAAGAAAACTCTTTTTCTTGATATAT26651064TCAGCTTGTTTGGTGTTGGATCATTTGTCTTAAGATCAATGGAGAAGATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCAACACCAAACAAGCTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCAACACCAAACAAGCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=TCCAACACCAAACAAGCTGA&k=0&no_gap=0&offset=0&limit=50
0.198 | 0.083 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGCTTGTTTGGTGTTGGA&k=0&no_gap=0&offset=0&limit=44
0.202 | 0.004 | cgi_end;

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