GGGenome | Results

2025-04-11 00:38:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Electrona antarctica genome assembly, chromosome: 14.
OX578259.1:12233157-12233178

AGTACTTGGGGAAAAACATAATAATAGAGA12233157TCCATGCTTAAAAACAGCAAAACGATGACAAATAATTGACAATTATAAATAA

rayctn0_0084_B11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO095603.1:14-35

CCGTTCAGAAAAA14TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT

rayctn0_0116_C08.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098108.1:29-50

GCACAAACAACACATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT

rayctn0_0120_D04.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO098443.1:29-50

GCACAAACAACGCATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATCACGTTGAAATGGAGTTTCATAATG

rayctn0_0152_A10.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO100933.1:29-50

GCACAAACAACGCATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATCATGTTGAAATGGAGTTTCATAATG

rayctn0_0158_F01.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO101466.1:29-50

GCACAAACAACACATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT

rcrycc0_0019_C09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO108059.1:29-50

GCACAAACAACACATTCATTCAGAAAAA29TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT

G04_51611.76.S1108242767.LDYN1-8140.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117718.1:79-100

GTGCACAAACAACACATTCATTCAGAAAAA79TCCATGCTTAAAAACAGCAAAAACAATGATGTTGAAATGGAGTTTCATATTT

Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:15190776-15190797

GTGCACAAACAACACATTCATTCAGAAAAA15190776TCCATGCTTAAAAACAGCAAAAACAATCATGTTGAAATGGAGTTTCATATTT

Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:21268323-21268344

ATGCACAAACAACGCATTCATTCAGAAAAA21268323TCCATGCTTAAAAACAGCAAAAACAATCATGTTGAAATGGAGTTTCATAATG

Sequence 10850 from patent US 7557201.
GP479853.1:424-445

CATTATGAAACTCCATTTCAACATGATTGT424TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCG

GA__Ea0029O13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0029O13f, mRNA sequence.
BE054786.2:444-465

CATTATGAAACTCCATTTCAACATGATTGT444TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAAAAAAAAAAAAAAAAAA

GA__Ea0013G11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0013G11f, mRNA sequence.
BE055670.2:208-229

CATTATGAAACTCCATTTCAACATGATTGT208TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAT

GA__Eb0032D10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032D10f, mRNA sequence.
BF278253.2:440-461

CATTATGAAACTCCATTTCAACATGATTGT440TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAT

GR__Ea06G05.f GR__Ea Gossypium raimondii cDNA clone GR__Ea06G05 5', mRNA sequence.
CO087768.1:233-254

AAATATGAAACTCCATTTCAACATGATTGT233TTTTGCTGTTTTTAAGCATGGATTTTTCTG

CM026A10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR454655.1:415-436

AAATATGAAACTCCATTTCAACATCATTGT415TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAC

UFL_305_34 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES812743.1:421-442

AAATATGAAACTCCATTTCAACATCATTGT421TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAA

128A04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV487831.1:417-438

AAATATGAAACTCCATTTCAACATCATTGT417TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAC

153H05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV489059.1:419-440

AAATATGAAACTCCATTTCAACATCATTGT419TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTAGTTTGTGCAC

B11_P-20_092 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX166014.1:534-555

AAATATGAAACTCCATTTCAACATCATTGG534TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGCAA

EST006405 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 31-K06 5', mRNA sequence.
GR713205.1:425-446

AAATATGAAACTCCATTTCAACATCATTGT425TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATG

EST008837 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-F09 5', mRNA sequence.
GR715637.1:138-159

CATTATGAAACTCCATTTCAACATGATTGT138TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAA

F08-110F08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796522.1:605-626

AAATATGAAACTCCATTTCAACATCATTGT605TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC

G09-062G9 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK796859.1:605-626

AAATATGAAACTCCATTTCAACATCATTGT605TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC

B06-116B06 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK797169.1:615-636

AAATATGAAACTCCATTTCAACATCATTGT615TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC

E07-GC11293 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK809422.1:494-515

AAATATGAAACTCCATTTCAACATCATTGT494TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGTGTTGTTTGTGC

A08-GC6497 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810374.1:441-462

AAATATGAAACTCCATTTCAACATCATTGT441TTTTGCTGTTTTTAAGCATGGATTTTTCTC

F09-GC4957 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810545.1:414-435

CATTATGAAACTCCATTTCAACATGATTGT414TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATT

A02-GC0305 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810660.1:400-421

CATTATGAAACTCCATTTCAACATGATTGT400TTTTGCTGTTTTTAAGCATGGATTTTTCTG

Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:45097199-45097220

AAATATGAAACTCCATTTCAACATGATTGT45097199TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAC

Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:104391029-104391050

CATTATGAAACTCCATTTCAACATGATTGT104391029TTTTGCTGTTTTTAAGCATGGATTTTTCTGAATGAATGCGTTGTTTGTGCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.707 | 0.699 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATGCTTAAAAACAGCAAAA&k=0&no_gap=0&offset=0&limit=50
2.055 | 1.348 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGCTGTTTTTAAGCATGGA&k=0&no_gap=0&offset=0&limit=40
2.069 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).