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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 18:40:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gouania willdenowi genome assembly, chromosome: 16.
LR131992.1:16770990-16771009
CTCTTTGTTGAGGACAGGTGTGGAATTTCA16770990TCCTCTTTGGTGCAACAGCAATCACTGCCAGTAACAGAGACTTCACTGAG
TZS1266 TZS (Sapwood-heartwood transition zone of black locust - Summer) Robinia pseudoacacia cDNA, mRNA sequence.
BI642830.1:117-136
TCAGGGAGGAAATTGGTGAGGAAAACTTTT117TCCTCTTTGGTGCAACAGCAGAAGATGTCCCTCGACTGAGGAAAGAAAGA
020918AARA014195HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA014195, mRNA sequence.
CN878674.1:241-260
TCCGTGAGGAAATTGGGGAGGATAACTTTT241TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
010723ABBB001353HT (ABBB) Pacific Rose spur buds from OFF trees Malus domestica cDNA clone ABBB001353, mRNA sequence.
CN901271.1:510-529
TCCGTGAGGAAATTGGGGAGGGTAACTTTT510TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCG
DC05025C12 Panax ginseng cDNA library Panax ginseng cDNA, mRNA sequence.
DV555586.1:552-571
TTAGGGAAGAAGTTGGGGAGGAGAATTTCT552TCCTCTTTGGTGCAACAGCAGATGAAGTTCCACGACTGCGCCAAGATAGA
000304AVBB005943HT (AVBB) Royal Gala young shoot Malus domestica cDNA clone AVBB005943, mRNA sequence.
EB106882.1:240-259
TCCGTGAGGAAATTGGGGAGGGTAACTTTT240TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
CGF2003363_D09 WLN-02: walnut leaf from plants infected with Pratylenchus vulnus Juglans hindsii x Juglans regia cDNA clone WLN-02-3_I_D09 5', mRNA sequence.
EL891506.1:199-218
TCAGAGAGGAAATTGGGGAGGAGAACTTTT199TCCTCTTTGGTGCAACAGCAGATGGAGTTCCAAGGCTGCGTAAGAAAAGA
CGF2003499_F05 WLN-02: walnut leaf from plants infected with Pratylenchus vulnus Juglans hindsii x Juglans regia cDNA clone WLN-02-5_I_F05 5', mRNA sequence.
EL892125.1:240-259
TCAGAGAGGAAATTGGGGAGGAGAACTTTT240TCCTCTTTGGTGCAACAGCAGATGAAGTTCCAAGGCTGCGTAAGAAAAGA
CGF2002908_B11 WLO-02: Walnut leaf Juglans hindsii x Juglans regia cDNA clone WLO-02-7_III_B11 5', mRNA sequence.
EL895528.1:19-38
GGGGGGGAGGAGACTTTT19TCCTCTTTGGTGCAACAGCAGATGAAGTTCCAAGGCTGCGTAAGAAAAGA
000531KHFA001106HT (KHFA) A. arguta ripe fruit Actinidia arguta cDNA clone KHFAA00110, mRNA sequence.
FG399985.1:553-572
TCAGGGAGGAAATAGGGGAGGAGAATTTCT553TCCTCTTTGGTGCAACAGCAGATGAAGTTCCTAAGCTTCGCAAGGAAAGA
010728KHFA002457HT (KHFA) A. arguta ripe fruit Actinidia arguta cDNA clone KHFAA00245, mRNA sequence.
FG400931.1:554-573
TCAGGGAGGAAATAGGGGAGGAGAATTTCT554TCCTCTTTGGTGCAACAGCAGATGAAGTTCCTAGGCTTCGCAAGGAAAGA
010730KHFA004857HT (KHFA) A. arguta ripe fruit Actinidia arguta cDNA clone KHFAA00485, mRNA sequence.
FG402435.1:554-573
TCAGGGAGGAAATAGGGGAGGAGAATTTCT554TCCTCTTTGGTGCAACAGCAGATGAAGTT
021007KAIA008587HT (KAIA) Actinidia chinensis ripe fruit Actinidia chinensis cDNA clone KAIAA00858, mRNA sequence.
FG454917.1:575-594
TCAGGGAGGAAATAGGGGAGGAGAATTTCT575TCCTCTTTGGTGCAACAGCAGATGAAGTT
011101KAIA001340HT (KAIA) Actinidia chinensis ripe fruit Actinidia chinensis cDNA clone KAIAA00134, mRNA sequence.
FG456187.1:155-174
TCAGGGAGGAAATAGGGGAGGAGAATTTCT155TCCTCTTTGGTGCAACAGCAGATGAAGTTCCTAGGCTTCGCAAGGAAAGA
020809KAOA001073HT (KAOA) Actinidia arguta ripe fruit Actinidia arguta cDNA clone KAOAA00107, mRNA sequence.
FG481832.1:146-165
TCAGGGAGGAAATAGGGGAGGAGAATTTCT146TCCTCTTTGGTGCAACAGCAGATGAAGTTCCTAGGCTTCGCAAGGAAAGA
EST0F326 Subtracted cDNA library of drought-stressed chickpea cultivar Cicer arietinum cDNA, mRNA sequence.
FL518943.1:57-76
TCAGGGAAGAGATTGGTGAGGAGAATTTTT57TCCTCTTTGGTGCAACAGCAGAGGATGTCCCTAGACTGAGAAAGGAAAGA
Quercus robur EST, clone WZ0AQRAP12YG17FM1.
FN750597.1:354-373
TCAGGGAGGAAATTGGGGAGGAGAACTTTT354TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Quercus robur EST, clone WZ0AQRAS35YJ03CM1.
FR632206.1:207-226
TCAGGGAGGAAATTGGGGAGGAGAACTTTT207TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Acacia mangium mRNA, clone: AM1016F23, 5'-end sequence.
FS588872.1:311-330
TCAGGGAGGAAATTGGTGAGGAAAACTTTT311TCCTCTTTGGTGCAACAGCAGATGATGTCCCTCGTCTCCGAAAGGAAAGA
Acacia mangium mRNA, clone: AM1016O12, 5'-end sequence.
FS589059.1:117-136
TCAGGGAGGAAATTGGTGAGGAAAACTTTT117TCCTCTTTGGTGCAACAGCAGATGATGTCCCTCGTCTCCGAAAGGAAAGA
Mdfrb3144P12.g1 Apple_EST_Mdfrb Malus domestica cDNA 5' similar to sp|P32811|PHSH_SOLTU ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STARCH PHOSPHORYLASE H) pir|A40995 starch phosphorylase (EC 2.4.1.1) H [s
GO521175.1:277-296
TCCGTGAGGAAATTGGGGAGGATAACTTTT277TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Mdltb7524M12.g1 Apple_EST_Mdltb Malus domestica cDNA 5' similar to sp|P32811|PHSH_SOLTU ALPHA-GLUCAN PHOSPHORYLASE, H ISOZYME (STARCH PHOSPHORYLASE H) pir|A40995 starch phosphorylase (EC 2.4.1.1) H [s
GO531407.1:182-201
TCCGTGAGGAAATTGGGGAGGGTAACTTTT182TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
TSA: Pyrus communis mRNA, contig: lc3921.
FX612508.1:35-54
TCCGTGAGGAAATTGGGGAGGATAACTTTT35TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTACGCAAGGACAGA
TSA: Pyrus communis mRNA, contig: lc16332.
FX624893.1:35-54
TCCGTGAGGAAATTGGGGAGGATAACTTTT35TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTACGCAAGGACAGA
TSA: Lens culinaris contig04906.Lecu mRNA sequence.
JI851173.1:1987-2006
TCCGGGAAGAGATTGGCGAAGAGAATTTTT1987TCCTCTTTGGTGCAACAGCAGACGAAGTCCCTCGACTCAGGAAGGAAAGA
TSA: Pisum sativum Ps_contig_mira-ass_38372 mRNA sequence.
JI934016.1:87-106
RKSSGGAAGAGATTGGCGAAGAGAATTTTT87TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTCGACTCAGGAAGGAAAGA
TSA: Pisum sativum Ps_contig_mira-ass_83393 mRNA sequence.
JI964600.1:532-551
TCCGGGAAGAGATTGGCGAAGAGAATTTTT532TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTCGACTCAGGAAGGAAAGA
TSA: Pisum sativum Ps_contig_mira-ass_87618 mRNA sequence.
JI966430.1:91-110
CGGGAAGAAGATTGGCGAAGAGTAATTTTT91TCCTCTTTGGTGCAACAGCAGATGAACGTCCCTCGACTCAAGGAAAGGAA
TSA: Pisum sativum contig03128.PisaPYK9 mRNA sequence.
JR953828.1:761-780
TCCGGGAAGAGATTGGCGAAGAGAATTTTT761TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTCGACTCAGGAAGGAAAGA
TSA: Corylus avellana CAV_015615.ca, mRNA sequence.
KA408808.1:2412-2431
TCAGGGAGGAGATTCAGGAAGAGAATTTTT2412TCCTCTTTGGTGCAACAGCAGATGAAGTGCCTAGGCTGCGCAAGAAAAGA
Carpinus viminea chromosome 2.
CP054668.1:3022558-3022577
TCAGGGAGGAGATTCAGGAAGAGAATTTTT3022558TCCTCTTTGGTGCAACAGCAGATGAAGTGCCTAGGCTTCGCAAGGAAAGA
Quercus dentata isolate Qdleaves-2020 chromosome 1.
CP116444.1:30897363-30897382
TCAGGGAGGAAATTGGGGAGGAGAACTTTT30897363TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Quercus variabilis isolate HB chromosome 1b.
CP129433.1:28709480-28709499
TCAGGGAGGAAATTGGGGAGGAGAACTTTT28709480TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:30112629-30112648
TCAGGGAGGAAATTGGAGAGGAGAACTTTT30112629TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:30147042-30147061
TCAGGGAGGAAATTGGGGACGAGAACTTTT30147042TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGAAAAGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:6878887-6878906
TCCGTGAGGAAATTGGGGAGGATAACTTTT6878887TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:6828574-6828593
TCCGTGAGGAAATTGGGGAGGATAACTTTT6828574TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:6536793-6536812
TCCGTGAGGAAATTGGGGAGGATAACTTTT6536793TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:6770000-6770019
TCCGTGAGGAAATTGGGGAGGGTAACTTTT6770000TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:6841539-6841558
TCCGTGAGGAAATTGGGGAGGATAACTTTT6841539TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:6428080-6428099
TCCGTGAGGAAATTGGGGAGGATAACTTTT6428080TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Fagus sylvatica genome assembly, chromosome: 9.
OU015769.1:837164-837183
TCAGGGAGGAAATTGGGGAGGAGAACTTTT837164TCCTCTTTGGTGCAACAGCAGATGAAGTGCCTAGGCTGCGCAAGGAAAGA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:6789968-6789987
TCCGTGAGGAAATTGGGGAGGATAACTTTT6789968TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:6929832-6929851
TCCGTGAGGAAATTGGGGAGGATAACTTTT6929832TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:6989409-6989428
TCCGTGAGGAAATTGGGGAGGATAACTTTT6989409TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:6969062-6969081
TCCGTGAGGAAATTGGGGAGGATAACTTTT6969062TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:6883914-6883933
TCCGTGAGGAAATTGGGGAGGATAACTTTT6883914TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAATCTGCGCAAGGACAGA
Quercus robur genome assembly, chromosome: 1.
OW028765.1:27701096-27701115
TCAGGGAGGAAATTGGGGAGGAGAACTTTT27701096TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Trifolium dubium genome assembly, chromosome: 3.
OX638064.1:5236404-5236423
TCAGGGAAGAGATTGGTGAGGAGAACTTTT5236404TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTCGACTGAGGAAGGAAAGA
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:28428115-28428134
TCAGGGAGGAGATCGGCGAGGAGAATTTTT28428115TCCTCTTTGGTGCAACAGCAGATGATGTCCCTCGACTGAGGAAGGAAAGA
Astragalus glycyphyllos genome assembly, chromosome: 1.
OY754307.1:58816933-58816952
TCAGGGAGGAGGTTGGTGAGGAGAATTTTT58816933TCCTCTTTGGTGCAACAGCAGAAGATGTCCCTAGACTCAGGAAGGAAAGA
Quercus cerris genome assembly, chromosome: 6.
OY770011.1:29539720-29539739
TCAGGGAGGAAATTGGGGAGGAGAACTTTT29539720TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAGGCTGCGCAAGGAAAGA
Dryas octopetala genome assembly, chromosome: 1.
OY992832.1:2830145-2830164
TCCGCGAGGAAATTGGAAAGGAGAACTTTT2830145TCCTCTTTGGTGCAACAGCAGATGAAGTCCCTAAGCTGCGCAAGGATAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCCTCTTTGGTGCAACAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCTCTTTGGTGCAACAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.327 | 1.318 | search_plus_done; http://172.18.8.135:50400/match?q=TCCTCTTTGGTGCAACAGCA&k=0&no_gap=0&offset=0&limit=50
1.380 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTGTTGCACCAAAGAGGA&k=0&no_gap=0&offset=0&limit=0
1.380 | 0.000 | cgi_end;

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