GGGenome | Results

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2025-04-14 00:34:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Cannabis sativa PK20543.1_1.CasaPuKu mRNA sequence.
JP450170.1:433-452

TTAAAGCCCCAAAGAAGAGAGCGGAGACTT433GGGTTCAAGAAGAGACTCGAAGCTTAATTGGGTTTCGAAGAGAAGTTGAT

TSA: Cannabis sativa PK20543.2_1.CasaPuKu mRNA sequence.
JP456216.1:288-307

TTAAAGCCCCAAAGAAGAGAGCGGAGACTT288GGGTTCAAGAAGAGACTCGAAGCTTAATTGGGTTTCGAAGAGAAGTTGAT

Sisyra terminalis genome assembly, chromosome: 4.
OY292277.1:19319093-19319112

GCCTCCAACAGGACAAATCTCCTGGGGGAT19319093GGGTTCAAGAAGAGACTCGAGTAGAACCAGAAACGTGACGTATGTGAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TCGAGTCTCTTCTTGAACCC&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=GGGTTCAAGAAGAGACTCGA&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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