GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:40:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BN24DYSC_UP_091_D08_8FEB2008_058 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG578353.1:667-686
AGAGAGATCAAAACCCAGATCAGACAGTCT667TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8735.
FX738166.1:1413-1432
AGATCAAAACCCAGATCAGACAGACAGTCT1413TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:12136154-12136173
AGATCAAAACCCAGATCAGACAGACAGTCT12136154TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:11676348-11676367
AGAGAGATCAAAACCCAGATCAGACAGTCT11676348TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica rapa genome, scaffold: A09.
LR031568.1:11663432-11663451
AGATCAAAACCCAGATCAGACAGACAGTCT11663432TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:11990141-11990160
AGATCAAAACCCAGATCAGACAGACAGTCT11990141TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
36RDBRG_UP_100_B11_20JAN2006_093 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES931142.1:27-46
ACTTCGGTTTGACGGAAAGACCAGAT27CGAGACTCTTAAAAGACCGAAGACTGTCTGTCTGATCTGGGTTTTGATCT
0194180 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV096131.1:111-130
ATCGACTTCGGTTTGACGGAAAGACCAGAT111CGAGACTCTTAAAAGACCGAAGACTGTCTGATCTGGGTTTTGATCTCTCT
BNAOV1GH_T3_099_H12_22SEPT2007_082 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR444724.1:79-98
ATCGACTTCGGTTTGACGGAAAGACCAGAT79CGAGACTCTTAAAAGACCGAAGACTGTCTGATCTGGGTTTTGATCTCTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14670.
FX702239.1:123-142
ATCGACTTCGGTTTGACGGAAAGACCAGAT123CGAGACTCTTAAAAGACCGAAGACTGTCTGTCTGATCTGGGTTTTGATCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGGTCTTTTAAGAGTCTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGGTCTTTTAAGAGTCTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=TCGGTCTTTTAAGAGTCTCG&k=0&no_gap=0&offset=0&limit=50
0.387 | 0.207 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGACTCTTAAAAGACCGA&k=0&no_gap=0&offset=0&limit=44
0.390 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).