GGGenome | Results

2025-04-10 21:19:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

OPYF00449 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 175-B7-T3.seq, mRNA sequence.
EL681379.1:435-458

GAATGATCAACTAAAGGCTGACGCGAAGGC435TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

OPMF00697 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 123-C12-T3.seq, mRNA sequence.
EL684459.1:438-461

GAATGATCAACTAAAGGCTGAGGCGAAGGC438TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

OPMF01309 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 133-F12-T3.seq, mRNA sequence.
EL685069.1:408-431

GAATGATCAACTAAAGGCTGAGGCGAAGGC408TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

pOP-CAP00346_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00346 5', mRNA sequence.
EY396147.1:424-447

GAATGATCAACTAAAGGCTGAGGCGAATGC424TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

pOP-EO03394_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03394 5', mRNA sequence.
EY413026.1:434-457

GAATGATCAACTAAAGGCTGAGGCGAAGGC434TCGTGGCGACATCATCAGCACAAAGC

EG-M11_004_D11 InfSSHM1, normal male inflorescence Elaeis guineensis cDNA clone EG-M11_004_D11 non-orientated, mRNA sequence.
GT119365.1:225-248

GAATGATCAACTAAAGGCTGAGGCGAAGGC225TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

EG-M21_007_F04 InfSSHM2, mantled male inflorescence Elaeis guineensis cDNA clone EG-M21_007_F04 non-orientated, mRNA sequence.
GT120430.1:262-285

GAATGATCAACTAAAGGCTGAGGCGAAGGC262TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

EG-E11_006_A03 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_006_A03, mRNA sequence.
JK668962.1:274-297

GAATGATCAACTAAAGGCTGAGGCGAAGGC274TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

EG-E11_010_G07 embsomSSHE1, Early somatic embryos (SSH) BAP/no BAP Elaeis guineensis cDNA clone EG-E11_010_G07, mRNA sequence.
JK669420.1:262-285

GAATGATCAACTAAAGGCTGAGGCGAAGGC262TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

TSA: Elaeis guineensis isotig08727.Elguifruit mRNA sequence.
JO095957.1:433-456

GAATGATCAACTAAAGGCTGAGGCGAAGGC433TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

Elaeis guineensis 60S ribosomal protein L21 (RPL21) mRNA, complete cds.
KC146060.1:472-495

GAATGATCAACTAAAGGCTGAGGCGAAGGC472TCGTGGCGACATCATCAGCACAAAGCGGCAGCCTGAAGGCCCCAAGCCTGGTTT

EG-A01_004_D05 Oil palm normal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599489.1:350-373

AAACCAGGCTTGGGGCCTTCAGGCTGCCGC350TTTGTGCTGATGATGTCGCCACGAGCCTTCGCCTCAGCCTTTAGTTGATCATTC

Elaeis guineensis EST, clone (6lib)_isotig05713.
LM629996.1:336-359

AAACCAGGCTTGGGGCCTTCAGGCTGCCGC336TTTGTGCTGATGATGTCGCCACGAGCCTTCGCCTCAGCCTTTAGTTGATCATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.806 | 0.797 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTGGCGACATCATCAGCACAAA&k=0&no_gap=0&offset=0&limit=50
0.957 | 0.151 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTGCTGATGATGTCGCCACGA&k=0&no_gap=0&offset=0&limit=39
0.958 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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