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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:57:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a017B19_SP6.
AM060961.1:145-164
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG145TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
BN20.051P24F011221 BN20 Brassica napus cDNA clone BN20051P24, mRNA sequence.
CD820307.1:263-282
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG263TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
11FGYSDB_UP_002_C10_16OCT2003_076 Brassica seedling 11FGYSDB Brassica napus cDNA 5', mRNA sequence.
CN729239.1:230-249
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG230TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
EL2754R Brassica embryo library (EL) Brassica napus cDNA clone EL2754 5', mRNA sequence.
CN828213.1:259-278
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG259TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
23-E010652-021-004-N05-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022N054Q, mRNA sequence.
CX194128.1:22-41
GAGCCGAGCTCAGCCCATCCG22TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
Brassica rapa subsp. pekinensis mRNA, clone: BRest02-O09, 5'-end sequence.
DC844546.1:217-236
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG217TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
Brassica oleracea var. viridis mRNA, clone: KALE-090J22, 5' end sequence.
DK490203.1:236-255
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG236TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
Brassica oleracea var. viridis mRNA, clone: KALE-106P08, 5' end sequence.
DK496457.1:234-253
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG234TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
Brassica oleracea var. viridis mRNA, clone: KALE-090J22, 3' end sequence.
DK549784.1:236-255
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG236TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
Brassica oleracea var. viridis mRNA, clone: KALE-106P08, 3' end sequence.
DK556035.1:234-253
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG234TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
110c06 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960793.1:228-247
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG228TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
BNDH2DCT_UP_001_F11_09JUN2004_085 Brassica napus seeds BNDH2DCT Brassica napus cDNA 5', mRNA sequence.
DW997137.1:270-289
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG270TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
34ETGS48_UP_014_A08_11FEB2005_064 Brassica napus 34ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE430252.1:263-282
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG263TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
BNBS6DCT_UP_016_H12_13APR2005_082 Brassica napus seeds BNBS6DCT Brassica napus cDNA 5', mRNA sequence.
EE457104.1:226-245
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG226TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
BNYS2DCT_UP_017_C08_01MAR2005_060 Brassica napus seeds BNYS2DCT Brassica napus cDNA 5', mRNA sequence.
EE474709.1:316-335
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG316TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
BNYS2DCT_UP_031_F01_03MAR2005_005 Brassica napus seeds BNYS2DCT Brassica napus cDNA 5', mRNA sequence.
EE475833.1:264-283
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG264TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
DHBN8DCT_UP_006_E03_19FEB2005_023 BRASSICA NAPUS SEEDS BNDH8DCT Brassica napus cDNA 5', mRNA sequence.
EE484784.1:263-282
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG263TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
EX2PLCL1_UP_011_G01_17APR2003_002 Brassica napus EX2PLCL1 Brassica napus cDNA 5', mRNA sequence.
EE502774.1:84-103
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG84TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
EX2PLCL3_UP_014_B01_17APR2003_007 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE503244.1:189-208
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG189TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCCTGGTCGGTTCGTC
24RDBNH_UP_073_F05_01NOV2005_037 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE509723.1:239-258
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG239TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
37RDBRH_UP_001_H09_26MAR2004_065 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE522228.1:266-285
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG266TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
38RDBRM_UP_065_A01_07DEC2005_015 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
EE528388.1:233-252
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG233TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
BNQA_UP_083_E03_01JUN2005_023 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE553023.1:40-59
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG40TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
BMSA01-T7-25-D10 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG019926.1:265-284
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG265TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
OL1321R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1321, mRNA sequence.
EH414399.1:247-266
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG247TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL2423R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2423, mRNA sequence.
EH416597.1:203-222
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG203TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL283R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL283, mRNA sequence.
EH417429.1:194-213
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG194TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL3385R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3385, mRNA sequence.
EH418516.1:194-213
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG194TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL347R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL347, mRNA sequence.
EH418729.1:208-227
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG208TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL5077R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5077, mRNA sequence.
EH421649.1:254-273
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG254TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL5280R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5280, mRNA sequence.
EH422008.1:221-240
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG221TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL6698R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6698, mRNA sequence.
EH424787.1:226-245
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG226TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL6962R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6962, mRNA sequence.
EH425298.1:253-272
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG253TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL7510R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7510, mRNA sequence.
EH426206.1:208-227
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG208TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL7571R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7571, mRNA sequence.
EH426332.1:212-231
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG212TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL7623R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7623, mRNA sequence.
EH426430.1:238-257
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG238TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL8644R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8644, mRNA sequence.
EH428466.1:228-247
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG228TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL8847R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8847, mRNA sequence.
EH428879.1:240-259
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG240TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL8849R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8849, mRNA sequence.
EH428883.1:226-245
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG226TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL8876R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8876, mRNA sequence.
EH428931.1:234-253
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG234TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL889R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL889, mRNA sequence.
EH428955.1:191-210
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG191TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
OL9632R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9632, mRNA sequence.
EH430429.1:224-243
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG224TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
65JKBNMO_UP_062_C11_17JUL2006_091 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591824.1:237-256
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG237TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
26RDBNT_UP_085_E03_06MAR2006_023 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES926893.1:263-282
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG263TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
38RDBRM_UP_095_C03_19JAN2006_027 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
ES935658.1:248-267
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG248TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
49RDOATR_UP_042_G01_25OCT2004_003 Brassica oleracea 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
ES946751.1:28-47
GCGTGAGAGCCGAGCTCAGCCCATCCG28TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
49RDOAT_UP_079_A06_30JAN2006_048 Brassica oleracea 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
ES949656.1:243-262
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG243TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
BNAEN3GH_UP_027_A06_01SEP2006_048 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES994665.1:262-281
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG262TCGTTATAAGCCTCAGCACTGGTCCCTCCCTCTTCCTTGGTCGGTTCGTC
0198939 Brassica napus Stem library Brassica napus cDNA, mRNA sequence.
EV129309.1:631-650
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG631TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
0204153 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV138227.1:288-307
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG288TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGCCGGTTCGTC
TSA: Raphanus sativus RS01996 mRNA sequence.
JT786543.1:794-813
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG794TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTCGGCCGGTTCGTC
KBrB003C02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB003C02, genomic survey sequence.
DX012278.1:600-619
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG600TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGGC
KBrB057G16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB057G16, genomic survey sequence.
DX053500.1:589-608
CCGTCGAGAGAGCCGAGCTCAGTCCATCCG589TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:9454537-9454556
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG9454537TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:9456572-9456591
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG9456572TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
Brassica rapa genome, scaffold: A05.
LR031570.1:15229396-15229415
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG15229396TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:41261654-41261673
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG41261654TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTCGGCCGGTTCGTC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:9338878-9338897
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG9338878TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTTGGTCGGTTCGTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:41261654-41261673
CCGTCGTGAGAGCCGAGCTCAGCCCATCCG41261654TCGTTATAAGCCTCAGCACTGGTCTCTCCCTCTTCCTCGGCCGGTTCGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGTTATAAGCCTCAGCACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTTATAAGCCTCAGCACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.465 | 3.456 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTTATAAGCCTCAGCACT&k=0&no_gap=0&offset=0&limit=50
3.523 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGCTGAGGCTTATAACGA&k=0&no_gap=0&offset=0&limit=0
3.523 | 0.000 | cgi_end;

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