GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 06:54:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis clone KBrB004O13, complete sequence.
CU695253.1:114726-114747
TCTCCACGGTACTTTTTCTCCCTCTCCCGC114726TCGTTTAGGGATTCATCGTTGCTAGGTCGATAGAAATGGATTCTAGTATATA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:20813336-20813357
TCTCCACGGTACTTTTTCTCCCTCTCCCGC20813336TCGTTTAGGGATTCATCGTTGCTAGGTCGATAGAAATGGATTCTAGTATATA
JBnY031F15F Brassica napus BAC library JBnY Brassica napus genomic clone JBnY031F15, genomic survey sequence.
DU104729.1:825-846
TATATACTAGAATCCATTTCTATCGACCTA825GCAACGATGAATCCCTAAACGAGCGGGAGAGGGAGAAAAAGTACCGTGGAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012O06, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189589.2:29718-29739
TATATACTAGAATCCATTTCTATCGACCTA29718GCAACGATGAATCCCTAAACGAGCGGGAGAGGGAGAAAAAGTACCGTGGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCGTTTAGGGATTCATCGTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGTTTAGGGATTCATCGTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=TCGTTTAGGGATTCATCGTTGC&k=0&no_gap=0&offset=0&limit=50
0.129 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GCAACGATGAATCCCTAAACGA&k=0&no_gap=0&offset=0&limit=48
0.130 | 0.001 | cgi_end;

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