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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 07:02:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST461268 potato leaves and petioles Solanum tuberosum cDNA clone cSTB44L3 5' sequence, mRNA sequence.
BG096749.1:15-38
GGTCCGATCTTCTT15TCTCTCTCTACATCTCTCCGTTGAATCTCTCTCCTCCATCTTCTTCAACTGTAA
KS12032C11 KS12 Capsicum annuum cDNA, mRNA sequence.
CA524065.1:2-25
T2TCTCTCTCTACATCTCTCCGTTGAATCTATTTCCTTCTTCTTCTTCTTCTTCTT
SV5_36D11_SV5_36_090 SV5 Solanum chacoense cDNA, mRNA sequence.
DN976863.1:9-32
GAGGCNTT9TCTCTCTCTACATCTCTCCGTTGAATCTCTCTCCTCCATCTTCTTCAAGTGTAA
TSA: Capsicum annuum MGMT_Contig47655 mRNA sequence.
JW097899.1:138-161
ATCCCACAACTCTCGCCGTCCGATCTTCTT138TCTCTCTCTACATCTCTCCGTTGAATCTATTTCCTTCTTCTTCTTCTTCTTCTT
TSA: Capsicum annuum CM_MegaContig_8199 mRNA sequence.
JW100181.1:151-174
ATCCCACAACTCTCGCCGTCCGATCTTCTT151TCTCTCTCTACATCTCTCCGTTGAATCTATTTCCTTCTTCTTCTTCTTCTTCTT
1061064094611_TF POTATO-F-02-40KB Solanum phureja genomic clone 1061064094611, genomic survey sequence.
GS576166.1:620-643
ACTATCACACTGTCGCCGTCCGATCTTCTT620TCTCTCTCTACATCTCTCCGTTGAATCTCTCTCCTCCATCTTCTTCAACTGTAA
Capsicum annuum Takanotsume DNA, chromosome 5, sequence.
AP026700.1:225934375-225934398
ATCCCACAACTCTCGCCGTCCGATCTTCTT225934375TCTCTCTCTACATCTCTCCGTTGAATCTATTTCCTTCTTCTTCTTCTTCTTCTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 5.
CP124727.1:224376659-224376682
ATCCCACAACTCTCGCCGTCCGATCTTCTT224376659TCTCTCTCTACATCTCTCCGTTGAATCTATTTCCTTCTTCTTCTTCTTCTTCTT
Capsicum annuum var. annuum coronatine insensitive 1 (COI1) mRNA, complete cds.
JQ085403.1:208-231
AAAAAAAAAAAAGAATTCGGATCCAAGCTT208TCTCTCTCTACATCTCTCCGTTGAATCTATTTCCTTCTTCTTCTTCTTCTTCTT
Villa cingulata genome assembly, chromosome: 1.
OX596018.1:424335-424358
ATTTAAAAAATCCTTAATATTGGTTGTTTT424335TCTCTCTCTACATCTCTCCGTTGAACTATATAATGTTTGTGAACTATATGATAG
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH121L12, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC238220.1:98784-98807
TTACAGTTGAAGAAGATGGAGGAGAGAGAT98784TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH134E14, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC238247.1:57624-57647
TTACAGTTGAAGAAGATGGAGGAGAGAGAT57624TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Solanum tuberosum cultivar P8 chromosome 5.
CP046690.1:47905469-47905492
TTACAGTTGAAGAAGATGGAGGAGAGAGAT47905469TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Solanum tuberosum cultivar MSH/14-112 chromosome 5.
CP046698.1:47900571-47900594
TTACAGTTGAAGAAGATGGAGGAGAGAGAT47900571TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Solanum pinnatisectum cultivar CGN17745 chromosome 5.
CP047565.1:47882816-47882839
TTACAGTTGAAGAAGATGGAGGAGAGAGAT47882816TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:54392114-54392137
TTACAGTTGAAGAAGATGGAGGAGAGAGAT54392114TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:165291260-165291283
TGAAGATGAAGAAGAAGAGAGGAAATGGAT165291260TCAACGGAGAGATGTAGAGAGAGAAAGGAGATCGGACGGCGAGTGTGGATGGAA
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:45238452-45238475
TTACAGTTGAAGAAGATGGAGGAGAGAGAT45238452TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGTGATAGT
Solanum pennellii chromosome ch05, complete genome.
HG975444.1:74782670-74782693
TTACAGTTGAAGAAGATGGAGGAGAGAGAT74782670TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTATGATAAT
Solanum dulcamara genome assembly, chromosome: 2.
OX359253.1:78607154-78607177
AAGAGAAGAAGAAAGAAGGAAGAAAGTGAT78607154TCAACGGAGAGATGTAGAGAGAGAAAGAAGATCGGACGGCGACAGTGGAACAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTCTCTCTACATCTCTCCGTTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTCTCTCTACATCTCTCCGTTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.260 | 0.251 | search_plus_done; http://172.18.8.135:50400/match?q=TCTCTCTCTACATCTCTCCGTTGA&k=0&no_gap=0&offset=0&limit=50
0.307 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=TCAACGGAGAGATGTAGAGAGAGA&k=0&no_gap=0&offset=0&limit=40
0.313 | 0.007 | cgi_end;

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