GGGenome | Results

2025-04-10 17:42:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

cC-esflcLEL13D13d1 Tomato flower library from a mixture of developmental stages Solanum lycopersicum cDNA clone cC-esflcLEL13D13d1, mRNA sequence.
BG626548.1:223-242

AGCACCACCTCCTTGGATCGGCCCATTAGA223TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCCACGGTCTC

cC-esflcLEL25A15a1 Tomato flower library from a mixture of developmental stages Solanum lycopersicum cDNA, mRNA sequence.
BG735061.1:310-329

AGCACCACCTCCTTGGATCGGCCCATTAGA310TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCC

EST604468 mixed potato tissues Solanum tuberosum cDNA clone STMEF58 3' end, mRNA sequence.
BQ118892.1:336-355

AGCACCACCGCCTTGGATCGGCCCATTAGA336TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST706068 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAB221 3' end, mRNA sequence.
CK259990.1:70-89

AGCCCCCCCCCCTTGGATCGGCCCATTAAA70TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST706978 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAB635 3' end, mRNA sequence.
CK260900.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST709092 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABJ81 3' end, mRNA sequence.
CK263014.1:340-359

AGCACCACCGCCTTGGATCGGCCCATTAGA340TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST709226 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABK66 3' end, mRNA sequence.
CK263148.1:297-316

AGCACCACCGCCTTGGATCGGCCCATTAGA297TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST711212 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABW95 3' end, mRNA sequence.
CK265134.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST716386 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACS36 3' end, mRNA sequence.
CK270308.1:71-90

AGCACCACCGCCTTGGATCGGCCCATTAAA71TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST720884 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADJ52 3' end, mRNA sequence.
CK274806.1:357-376

AGCACCACCGCCTTGGATCGGCCCATTAGA357TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST721723 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADO68 3' end, mRNA sequence.
CK275645.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST721730 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADO72 3' end, mRNA sequence.
CK275652.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST721860 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADP51 3' end, mRNA sequence.
CK275782.1:268-287

AGCACCACCGCCTTGGATCGGCCCATTAGA268TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST722901 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADV95 3' end, mRNA sequence.
CK276823.1:69-88

AACACCCCCCCCTTGGATCGGCCCCTTAAA69TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCCC

EST723810 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAE156 3' end, mRNA sequence.
CK277732.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST725222 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAEA42 3' end, mRNA sequence.
CK279144.1:342-361

AGCACCACCGCCTTGGATCGGCCCATTAGA342TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGACACGGCCTC

EST725298 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAEA86 3' end, mRNA sequence.
CK279220.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

EST725835 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAEE08 3' end, mRNA sequence.
CK279757.1:340-359

AGCACCACCGCCTTGGATCGGCCCATTAGA340TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

20292 Swollen Stolon Solanum tuberosum cDNA, mRNA sequence.
CK719967.1:353-372

AGCAGCACCGCCTTGGATCGGCCCATTAGA353TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

30996 In vitro Root Solanum tuberosum cDNA, mRNA sequence.
CK860085.1:330-349

AGCACCACCGCCTTGGATCGGCCCATTAGA330TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

10559.1 After-Cooking Darkening A Solanum tuberosum cDNA clone 10559 5', mRNA sequence.
CN462286.1:244-263

AGCACCACCGCCTTGGATCGGCCCATTAGA244TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

9085.1 After-Cooking Darkening A Solanum tuberosum cDNA clone 9085 5', mRNA sequence.
CN465057.1:244-263

AGCACCACCGACTTGGATCGGGCCATTAGA244TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

41970.1 Common Scab-Challenged Tubers Solanum tuberosum cDNA clone 41970 5', mRNA sequence.
CV469347.1:235-254

AGCACCACCGCCTTGGATCGGCCCATTAGA235TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

43950.1 Common Scab-Challenged Tubers Solanum tuberosum cDNA clone 43950 5', mRNA sequence.
CV470980.1:334-353

AGCACCACCGCCTTGGATCGGCCCATTAGA334TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

44748.1 Common Scab-Challenged Tubers Solanum tuberosum cDNA clone 44748 5', mRNA sequence.
CV471565.1:344-363

AGCACCACCGCCTTGGATCGGCCCATTAGA344TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

96255.1 Cold Sweetening C Solanum tuberosum cDNA clone 96255 5', mRNA sequence.
DV625856.1:232-251

AGCACCACCGCCTTGGATCGGCCCATTAGA232TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

96261.1 Cold Sweetening C Solanum tuberosum cDNA clone 96261 5', mRNA sequence.
DV625862.1:234-253

GCACCACCGCCTTGGAATCGGCCCATTAAA234TCTGAATCCACGTCCCCTACCACGAAGTTCCCCTTCCACGGCCACGGCCT

96701.1 Cold Sweetening C Solanum tuberosum cDNA clone 96701 5', mRNA sequence.
DV626261.1:235-254

AGCACCACCGCCTTGGATCGGCCCATTAGA235TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: CAL05K04, 3'end, expressed in callus at 3d after subculture.
FS010613.1:366-385

AGCACCACCGCCTTGGATCGGCCCATTAGA366TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACG

Solanum melongena mRNA, clone: CHX02K10, 3'end, expressed in ovary at 24h after anthesis.
FS012442.1:337-356

AGCACCACCGCCTTGGATCGGCCCATTAGA337TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCATGGCCACGGCCTC

Solanum melongena mRNA, clone: CPA03N12, 3'end, expressed in ovary at 24h after anthesis.
FS016421.1:196-215

AGCACCACCGCCTTGGATCGGCCCATTGGA196TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: MLF01D12, 3'end, expressed in leaf at fully expanded leaf.
FS022707.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: MLF02D11, 3'end, expressed in leaf at fully expanded leaf.
FS023361.1:343-362

AGCACCACCGCCTTGGATCGGCCCATTAGA343TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: RBW06K20, 3'end, expressed in root at 3w after germination.
FS052414.1:314-333

AGCACCACCGCCTTGGATCGGCCCATTAGA314TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: ROL01K03, 3'end, expressed in root at 3w after germination.
FS053417.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAGA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: SmFL03K10, 3'end.
FS068692.1:358-377

AGCACCACCGCCTTGGATCGGCCCATTAAA358TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: SmFL07H21, 3'end.
FS071120.1:340-359

AGCACCACCGCCTTGGATCGGCCCATTAAA340TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: SmFL11D13, 3'end.
FS073659.1:339-358

AGCACCACCGCCTTGGATCGGCCCATTAAA339TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: SmFL12D23, 3'end.
FS074394.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAAA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: SmFL24K22, 3'end.
FS082858.1:341-360

AGCACCACCGCCTTGGATCGGCCCATTAAA341TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum melongena mRNA, clone: SmFL31O17, 3'end.
FS087971.1:340-359

AGCACCACCGCCTTGGATCGGCCCATTAAA340TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVL08J14, 3'end, expressed in leaf at vegetative stage, 2 months after germination.
FS102540.1:210-229

AGCACCAACACCTTGGATCGGCCCATTAGA210TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVL30I02, 3'end, expressed in leaf at vegetative stage, 2 months after germination.
FS104103.1:359-378

AGCACCAACACCTTGGATCGGCCCATTAAA359TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR02B18, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS105577.1:356-375

AGCACCAACACCTTGGATCGGCCCATTAGA356TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR02L03, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS105942.1:308-327

AGCACCAACACCTTGGATCGGCCCATTAGA308TCTGAATCCACGTCCCCTACCACGAGTTCCCCATCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR03M07, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS106566.1:216-235

AGCACCAACACCTTGGATCGGCCCATTAAA216TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR11I16, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS111021.1:135-154

AGCACCGACACCTTGGATCGGCCCATTAAA135TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR14B22, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS112538.1:330-349

AGCACCAACACCTTGGATCGGCCCATTAGA330TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR15L03, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS113489.1:219-238

AGCACCAACACCTTGGATCGGCCCATTAAA219TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum torvum mRNA, clone: TVR15N07, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS113568.1:306-325

AGCACCAACACCTTGGATCGGCCCATTAGA306TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTC

Solanum lycopersicum DNA, clone: MTBAC053I20_T7.
FT259372.1:38-57

ACCACTACCTCCTTGGATCGGCCCATTAGA38TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCCACGGCCTA

Eustoma grandiflorum DNA, chromosome 26, draft genome sequence.
AP025065.1:7379375-7379394

AGCAGATGCACGCACTGGTGGTCCATTAGA7379375TCTGAATCCACGTCCCCTACCACGTGTTCCCCGTCCACGTCCTCGGACAC

Solanum lycopersicum Micro-Tom DNA, chromosome 4, draft genome sequence.
AP028938.1:67626210-67626229

AGCACCACCTCCTTGGATCGGCCCATTAGA67626210TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum lycopersicum cultivar I-3 chromosome 4.
CP023760.1:65747963-65747982

AGCACCACCTCCTTGGATCGGCCCATTAGA65747963TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum tuberosum cultivar P8 chromosome 4.
CP046685.1:71132508-71132527

AGCACCACCGCCTTGGATCGGCCCATTAGA71132508TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum tuberosum cultivar MSH/14-112 chromosome 4.
CP046699.1:71126501-71126520

AGCACCACCGCCTTGGATCGGCCCATTAGA71126501TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum pinnatisectum cultivar CGN17745 chromosome 4.
CP047561.1:71105554-71105573

AGCACCACCGCCTTGGATCGGCCCATTAGA71105554TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum tuberosum cultivar Solyntus chromosome 4.
CP055237.1:71072255-71072274

AGCACCACCACCTTGGATCGGCCCATTAGA71072255TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum pennellii chromosome ch04, complete genome.
HG975443.1:76391117-76391136

AGCACCACCGCCTTGGATCGGCCCATTAGA76391117TCTGAATCCACGTCCCCTACCACGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum lycopersicum chromosome ch04, complete genome.
HG975516.1:63340912-63340931

AGCACCACCTCCTTGGATCGGCCCATTAGA63340912TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCCACGGCCTA

Solanum lycopersicum genome assembly, chromosome: 4.
OU640347.1:66921349-66921368

AGCACCACCTCCTTGGATCGGCCCATTAGA66921349TCTGAATCCACGTCCCCTACCGCGAGTTCCCCTTCCACGGCCACGGCCTA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
3.165 | 3.156 | search_plus_done; http://172.18.8.135:50400/match?q=TCTGAATCCACGTCCCCTAC&k=0&no_gap=0&offset=0&limit=50
3.235 | 0.070 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGGGGACGTGGATTCAGA&k=0&no_gap=0&offset=0&limit=0
3.235 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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